4PLH
Crystal structure of ancestral apicomplexan malate dehydrogenase with oxamate.
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0003824 | molecular_function | catalytic activity |
A | 0004459 | molecular_function | L-lactate dehydrogenase activity |
A | 0006089 | biological_process | lactate metabolic process |
A | 0006090 | biological_process | pyruvate metabolic process |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
A | 0019752 | biological_process | carboxylic acid metabolic process |
B | 0000166 | molecular_function | nucleotide binding |
B | 0003824 | molecular_function | catalytic activity |
B | 0004459 | molecular_function | L-lactate dehydrogenase activity |
B | 0006089 | biological_process | lactate metabolic process |
B | 0006090 | biological_process | pyruvate metabolic process |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
B | 0019752 | biological_process | carboxylic acid metabolic process |
C | 0000166 | molecular_function | nucleotide binding |
C | 0003824 | molecular_function | catalytic activity |
C | 0004459 | molecular_function | L-lactate dehydrogenase activity |
C | 0006089 | biological_process | lactate metabolic process |
C | 0006090 | biological_process | pyruvate metabolic process |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
C | 0019752 | biological_process | carboxylic acid metabolic process |
D | 0000166 | molecular_function | nucleotide binding |
D | 0003824 | molecular_function | catalytic activity |
D | 0004459 | molecular_function | L-lactate dehydrogenase activity |
D | 0006089 | biological_process | lactate metabolic process |
D | 0006090 | biological_process | pyruvate metabolic process |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
D | 0019752 | biological_process | carboxylic acid metabolic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 8 |
Details | binding site for residue OXM A 401 |
Chain | Residue |
A | ASN122 |
A | ARG153 |
A | HIS177 |
A | GLY220 |
A | NAI403 |
A | HOH520 |
A | HOH596 |
A | HOH609 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue NA A 402 |
Chain | Residue |
A | ILE15 |
A | GLY16 |
A | THR79 |
A | NAI403 |
A | GLY13 |
site_id | AC3 |
Number of Residues | 29 |
Details | binding site for residue NAI A 403 |
Chain | Residue |
A | GLY13 |
A | ASN14 |
A | ILE15 |
A | PHE34 |
A | ASP35 |
A | ILE36 |
A | VAL37 |
A | MET40 |
A | THR79 |
A | ALA80 |
A | GLY81 |
A | ILE100 |
A | VAL120 |
A | ASN122 |
A | MET145 |
A | LEU149 |
A | HIS177 |
A | OXM401 |
A | NA402 |
A | HOH502 |
A | HOH518 |
A | HOH536 |
A | HOH538 |
A | HOH539 |
A | HOH540 |
A | HOH542 |
A | HOH560 |
A | HOH573 |
D | GLY87 |
site_id | AC4 |
Number of Residues | 6 |
Details | binding site for residue OXM B 401 |
Chain | Residue |
B | ASN122 |
B | ARG153 |
B | HIS177 |
B | GLY220 |
B | NAI402 |
B | HOH528 |
site_id | AC5 |
Number of Residues | 31 |
Details | binding site for residue NAI B 402 |
Chain | Residue |
B | GLY13 |
B | ASN14 |
B | ILE15 |
B | PHE34 |
B | ASP35 |
B | ILE36 |
B | VAL37 |
B | MET40 |
B | THR79 |
B | ALA80 |
B | GLY81 |
B | ILE82 |
B | PRO83 |
B | ILE100 |
B | VAL120 |
B | ASN122 |
B | MET145 |
B | LEU149 |
B | HIS177 |
B | ALA232 |
B | OXM401 |
B | HOH508 |
B | HOH509 |
B | HOH512 |
B | HOH523 |
B | HOH526 |
B | HOH544 |
B | HOH545 |
B | HOH546 |
B | HOH548 |
B | HOH562 |
site_id | AC6 |
Number of Residues | 6 |
Details | binding site for residue OXM C 401 |
Chain | Residue |
C | ASN122 |
C | ARG153 |
C | HIS177 |
C | GLY220 |
C | NAI402 |
C | HOH587 |
site_id | AC7 |
Number of Residues | 22 |
Details | binding site for residue NAI C 402 |
Chain | Residue |
C | LEU149 |
C | HIS177 |
C | OXM401 |
C | HOH517 |
C | HOH518 |
C | HOH533 |
C | HOH548 |
C | HOH571 |
C | GLY13 |
C | ASN14 |
C | ILE15 |
C | ASP35 |
C | ILE36 |
C | VAL37 |
C | MET40 |
C | THR79 |
C | ALA80 |
C | GLY81 |
C | ILE100 |
C | VAL120 |
C | ASN122 |
C | MET145 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue OXM D 401 |
Chain | Residue |
D | ASN122 |
D | ARG153 |
D | HIS177 |
D | GLY220 |
D | NAI403 |
D | HOH529 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residue NA D 402 |
Chain | Residue |
D | GLY13 |
D | GLY16 |
D | THR79 |
D | NAI403 |
site_id | AD1 |
Number of Residues | 26 |
Details | binding site for residue NAI D 403 |
Chain | Residue |
D | GLY13 |
D | ASN14 |
D | ILE15 |
D | ASP35 |
D | ILE36 |
D | VAL37 |
D | MET40 |
D | THR79 |
D | ALA80 |
D | GLY81 |
D | ILE100 |
D | VAL120 |
D | ASN122 |
D | MET145 |
D | LEU149 |
D | HIS177 |
D | OXM401 |
D | NA402 |
D | HOH525 |
D | HOH544 |
D | HOH545 |
D | HOH561 |
D | HOH569 |
D | HOH596 |
D | HOH610 |
D | HOH633 |