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4PIG

Crystal structure of the ubiquitin K11S mutant

Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue CA A 101
ChainResidue
AHOH206
BHOH204
BHOH213
DTHR12
DHOH207
DHOH215
DHOH224

site_idAC2
Number of Residues2
Detailsbinding site for residue CL A 102
ChainResidue
ALEU71
CLEU71

site_idAC3
Number of Residues2
Detailsbinding site for residue CL A 103
ChainResidue
ALEU15
AGLU16

site_idAC4
Number of Residues3
Detailsbinding site for residue CA B 101
ChainResidue
BASN60
BHOH212
BHOH217

site_idAC5
Number of Residues3
Detailsbinding site for residue NA B 102
ChainResidue
BTYR59
DGLU18
DHOH222

site_idAC6
Number of Residues3
Detailsbinding site for residue CL C 101
ChainResidue
CLEU15
CGLU16
CHOH245

site_idAC7
Number of Residues3
Detailsbinding site for residue CL C 102
ChainResidue
BHIS68
CGLN49
CHOH226

site_idAC8
Number of Residues3
Detailsbinding site for residue CL C 103
ChainResidue
CHIS68
DLYS6
DHIS68

site_idAC9
Number of Residues5
Detailsbinding site for residue CA D 101
ChainResidue
AGLU24
AHOH225
AHOH227
DASP32
DHOH203

site_idAD1
Number of Residues3
Detailsbinding site for residue CA D 102
ChainResidue
DGLU24
DASP52
DHOH256

site_idAD2
Number of Residues3
Detailsbinding site for residue CL D 103
ChainResidue
BLEU71
DLEU71
DHOH227

site_idAD3
Number of Residues4
Detailsbinding site for residue CL D 104
ChainResidue
DLEU15
DGLU16
DHOH235
DHOH244

site_idAD4
Number of Residues3
Detailsbinding site for residue CL D 105
ChainResidue
DARG42
DARG72
DHOH229

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
ALYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsSITE: Interacts with activating enzyme
ChainResidueDetails
AARG54
AARG72
BARG54
BARG72
CARG54
CARG72
DARG54
DARG72

site_idSWS_FT_FI2
Number of Residues4
DetailsSITE: Essential for function
ChainResidueDetails
AHIS68
BHIS68
CHIS68
DHIS68

site_idSWS_FT_FI3
Number of Residues4
DetailsMOD_RES: Phosphoserine; by PINK1 => ECO:0000269|PubMed:24660806, ECO:0000269|PubMed:24751536, ECO:0000269|PubMed:24784582, ECO:0000269|PubMed:25474007, ECO:0000269|PubMed:25527291
ChainResidueDetails
ASER65
BSER65
CSER65
DSER65

site_idSWS_FT_FI4
Number of Residues4
DetailsMOD_RES: (Microbial infection) ADP-ribosylthreonine => ECO:0000269|PubMed:32330457
ChainResidueDetails
ATHR66
BTHR66
CTHR66
DTHR66

site_idSWS_FT_FI5
Number of Residues4
DetailsMOD_RES: ADP-ribosylglycine => ECO:0000269|PubMed:28525742
ChainResidueDetails
AGLY76
BGLY76
CGLY76
DGLY76

site_idSWS_FT_FI6
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603
ChainResidueDetails
ALYS6
BLYS6
CLYS6
DLYS6

site_idSWS_FT_FI7
Number of Residues8
DetailsCROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
ChainResidueDetails
AGLY76
BGLY76
CGLY76
DGLY76

site_idSWS_FT_FI8
Number of Residues8
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144
ChainResidueDetails
ASER11
ALYS48
BSER11
BLYS48
CSER11
CLYS48
DSER11
DLYS48

site_idSWS_FT_FI9
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15466860
ChainResidueDetails
ALYS27
BLYS27
CLYS27
DLYS27

site_idSWS_FT_FI10
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:25752573, ECO:0000269|PubMed:25752577, ECO:0000269|PubMed:34239127
ChainResidueDetails
ALYS29
BLYS29
CLYS29
DLYS29

site_idSWS_FT_FI11
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:25752577
ChainResidueDetails
ALYS33
BLYS33
CLYS33
DLYS33

site_idSWS_FT_FI12
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:18719106
ChainResidueDetails
ALYS63
BLYS63
CLYS63
DLYS63

225158

PDB entries from 2024-09-18

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