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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4PIG

Crystal structure of the ubiquitin K11S mutant

Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue CA A 101
ChainResidue
AHOH206
BHOH204
BHOH213
DTHR12
DHOH207
DHOH215
DHOH224
site_idAC2
Number of Residues2
Detailsbinding site for residue CL A 102
ChainResidue
ALEU71
CLEU71
site_idAC3
Number of Residues2
Detailsbinding site for residue CL A 103
ChainResidue
ALEU15
AGLU16
site_idAC4
Number of Residues3
Detailsbinding site for residue CA B 101
ChainResidue
BASN60
BHOH212
BHOH217
site_idAC5
Number of Residues3
Detailsbinding site for residue NA B 102
ChainResidue
BTYR59
DGLU18
DHOH222
site_idAC6
Number of Residues3
Detailsbinding site for residue CL C 101
ChainResidue
CLEU15
CGLU16
CHOH245
site_idAC7
Number of Residues3
Detailsbinding site for residue CL C 102
ChainResidue
BHIS68
CGLN49
CHOH226
site_idAC8
Number of Residues3
Detailsbinding site for residue CL C 103
ChainResidue
CHIS68
DLYS6
DHIS68
site_idAC9
Number of Residues5
Detailsbinding site for residue CA D 101
ChainResidue
AGLU24
AHOH225
AHOH227
DASP32
DHOH203
site_idAD1
Number of Residues3
Detailsbinding site for residue CA D 102
ChainResidue
DGLU24
DASP52
DHOH256
site_idAD2
Number of Residues3
Detailsbinding site for residue CL D 103
ChainResidue
BLEU71
DLEU71
DHOH227
site_idAD3
Number of Residues4
Detailsbinding site for residue CL D 104
ChainResidue
DLEU15
DGLU16
DHOH235
DHOH244
site_idAD4
Number of Residues3
Detailsbinding site for residue CL D 105
ChainResidue
DARG42
DARG72
DHOH229
Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
ALYS27-ASP52
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsSite: {"description":"Interacts with activating enzyme"}
ChainResidueDetails
site_idSWS_FT_FI2
Number of Residues4
DetailsSite: {"description":"Essential for function"}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues4
DetailsModified residue: {"description":"Phosphoserine; by PINK1","evidences":[{"source":"PubMed","id":"24660806","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24751536","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24784582","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25474007","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25527291","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues4
DetailsModified residue: {"description":"(Microbial infection) ADP-ribosylthreonine","evidences":[{"source":"PubMed","id":"32330457","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"16443603","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues6
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"16543144","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18719106","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues8
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"16443603","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16543144","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"15466860","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"16543144","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25752573","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25752577","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34239127","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"25752577","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues150
DetailsDomain: {"description":"Ubiquitin-like","evidences":[{"source":"PROSITE-ProRule","id":"PRU00214","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI12
Number of Residues2
DetailsModified residue: {"description":"ADP-ribosylglycine","evidences":[{"source":"PubMed","id":"28525742","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI13
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)"}
ChainResidueDetails

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PDB entries from 2025-11-05

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