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4ONW

Crystal structure of the catalytic domain of DapE protein from V.cholerea

Replaces:  3T68
Functional Information from GO Data
ChainGOidnamespacecontents
A0016787molecular_functionhydrolase activity
B0016787molecular_functionhydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 401
ChainResidue
AARG145
AGLU148
ATHR149
AHOH522
BARG179
BHOH452

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BU1 A 402
ChainResidue
AILE157
AMET224
AGLY225
AALA226
AHOH505
AMET151
AGLU155
ALEU156

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BU1 A 403
ChainResidue
AGLU40
AARG55
AGLY57
ATHR58
AHOH575

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 404
ChainResidue
AARG56
APRO121
AASP122
AHIS123

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 405
ChainResidue
AGLY67
ALEU130
ATHR132
ATHR143
AVAL162
AASP217

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE BU1 B 301
ChainResidue
AHIS81
ATHR82
BVAL89
BASP91
BGLY92
BHOH558

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 302
ChainResidue
AARG179
AHOH550
BARG145
BGLU148
BTHR149
BHOH443

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE BU1 B 303
ChainResidue
BVAL147
BMET151
BGLU155
BLEU156
BILE157
BMET224
BGLY225
BALA226
BHOH411

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE BU1 B 304
ChainResidue
AVAL89
AASP91
AGLY92
BLEU77
BTRP80
BHIS81

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE BU1 B 305
ChainResidue
BGLU40
BARG55
BGLY57
BHOH562

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ACT B 306
ChainResidue
BGLY178
BGLY214
BGLY218
BGLU230

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO B 307
ChainResidue
BPRO121
BHIS123

site_idBC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 308
ChainResidue
BGLY67
BHIS68
BVAL162
BGLU164
BTHR215
BASP217
BHOH543

Functional Information from PROSITE/UniProt
site_idPS00759
Number of Residues39
DetailsARGE_DAPE_CPG2_2 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. AADmKGslAcmIvaverfiaehpdhqgs.IgFLItsDEE.G
ChainResidueDetails
AALA99-GLY137

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"description":"Proton acceptor","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues10
DetailsBinding site: {"evidences":[{"source":"PDB","id":"4OP4","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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