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4ONM

Crystal structure of human Mms2/Ubc13 - NSC697923

Functional Information from GO Data
ChainGOidnamespacecontents
A0000209biological_processprotein polyubiquitination
A0000729biological_processDNA double-strand break processing
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005737cellular_componentcytoplasm
A0006282biological_processregulation of DNA repair
A0006301biological_processpostreplication repair
A0016567biological_processprotein ubiquitination
A0031371cellular_componentubiquitin conjugating enzyme complex
A0031372cellular_componentUBC13-MMS2 complex
A0070062cellular_componentextracellular exosome
A0070534biological_processprotein K63-linked ubiquitination
A1902523biological_processpositive regulation of protein K63-linked ubiquitination
A2000781biological_processpositive regulation of double-strand break repair
B0000151cellular_componentubiquitin ligase complex
B0000209biological_processprotein polyubiquitination
B0000724biological_processdouble-strand break repair via homologous recombination
B0000729biological_processDNA double-strand break processing
B0003723molecular_functionRNA binding
B0004842molecular_functionubiquitin-protein transferase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005634cellular_componentnucleus
B0005654cellular_componentnucleoplasm
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006281biological_processDNA repair
B0006282biological_processregulation of DNA repair
B0006301biological_processpostreplication repair
B0006511biological_processubiquitin-dependent protein catabolic process
B0006513biological_processprotein monoubiquitination
B0016567biological_processprotein ubiquitination
B0016740molecular_functiontransferase activity
B0019787molecular_functionubiquitin-like protein transferase activity
B0031371cellular_componentubiquitin conjugating enzyme complex
B0031372cellular_componentUBC13-MMS2 complex
B0031625molecular_functionubiquitin protein ligase binding
B0032991cellular_componentprotein-containing complex
B0043123biological_processpositive regulation of canonical NF-kappaB signal transduction
B0043130molecular_functionubiquitin binding
B0043161biological_processproteasome-mediated ubiquitin-dependent protein catabolic process
B0045739biological_processpositive regulation of DNA repair
B0050852biological_processT cell receptor signaling pathway
B0051092biological_processpositive regulation of NF-kappaB transcription factor activity
B0061631molecular_functionubiquitin conjugating enzyme activity
B0070062cellular_componentextracellular exosome
B0070534biological_processprotein K63-linked ubiquitination
B0097027molecular_functionubiquitin-protein transferase activator activity
B0098794cellular_componentpostsynapse
B0098978cellular_componentglutamatergic synapse
B0140252biological_processregulation protein catabolic process at postsynapse
B0140374biological_processantiviral innate immune response
B1902523biological_processpositive regulation of protein K63-linked ubiquitination
B1902533biological_processpositive regulation of intracellular signal transduction
B1904262biological_processnegative regulation of TORC1 signaling
B2000781biological_processpositive regulation of double-strand break repair
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 201
ChainResidue
AASN60
AILE62
AGLY90
AILE91
AASN92
AASN93
AHOH379
AHOH399

site_idAC2
Number of Residues11
DetailsBINDING SITE FOR RESIDUE N2F B 201
ChainResidue
BASN79
BVAL80
BASP81
BARG85
BILE86
BCYS87
BLEU121
BALA122
BASN123
BHOH305
BPRO78

Functional Information from PROSITE/UniProt
site_idPS00183
Number of Residues16
DetailsUBC_1 Ubiquitin-conjugating (UBC) active site signature. YHPNVdkl.GrICLdiL
ChainResidueDetails
BTYR76-LEU91

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Glycyl thioester intermediate => ECO:0000255|PROSITE-ProRule:PRU00388
ChainResidueDetails
BCYS87

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
BLYS82

site_idSWS_FT_FI3
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ISG15) => ECO:0000269|PubMed:16112642, ECO:0000269|PubMed:16122702
ChainResidueDetails
BLYS92

227111

PDB entries from 2024-11-06

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