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4OIN

Crystal structure of Thermus thermophilus transcription initiation complex soaked with GE23077

Functional Information from GO Data
ChainGOidnamespacecontents
A0000428cellular_componentDNA-directed RNA polymerase complex
A0003677molecular_functionDNA binding
A0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0006351biological_processDNA-templated transcription
A0016740molecular_functiontransferase activity
A0016779molecular_functionnucleotidyltransferase activity
A0034062molecular_function5'-3' RNA polymerase activity
A0046983molecular_functionprotein dimerization activity
B0000428cellular_componentDNA-directed RNA polymerase complex
B0003677molecular_functionDNA binding
B0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0006351biological_processDNA-templated transcription
B0016740molecular_functiontransferase activity
B0016779molecular_functionnucleotidyltransferase activity
B0034062molecular_function5'-3' RNA polymerase activity
B0046983molecular_functionprotein dimerization activity
C0000428cellular_componentDNA-directed RNA polymerase complex
C0003677molecular_functionDNA binding
C0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
C0006351biological_processDNA-templated transcription
C0016740molecular_functiontransferase activity
C0016779molecular_functionnucleotidyltransferase activity
C0032549molecular_functionribonucleoside binding
C0034062molecular_function5'-3' RNA polymerase activity
D0000287molecular_functionmagnesium ion binding
D0000428cellular_componentDNA-directed RNA polymerase complex
D0003677molecular_functionDNA binding
D0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
D0005515molecular_functionprotein binding
D0006351biological_processDNA-templated transcription
D0008270molecular_functionzinc ion binding
D0016740molecular_functiontransferase activity
D0016779molecular_functionnucleotidyltransferase activity
D0034062molecular_function5'-3' RNA polymerase activity
D0046872molecular_functionmetal ion binding
E0000428cellular_componentDNA-directed RNA polymerase complex
E0003677molecular_functionDNA binding
E0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
E0006351biological_processDNA-templated transcription
E0016740molecular_functiontransferase activity
E0016779molecular_functionnucleotidyltransferase activity
E0034062molecular_function5'-3' RNA polymerase activity
F0003677molecular_functionDNA binding
F0003700molecular_functionDNA-binding transcription factor activity
F0005737cellular_componentcytoplasm
F0006352biological_processDNA-templated transcription initiation
F0006355biological_processregulation of DNA-templated transcription
F0010468biological_processregulation of gene expression
F0016987molecular_functionsigma factor activity
F0046872molecular_functionmetal ion binding
F2000142biological_processregulation of DNA-templated transcription initiation
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG B 2001
ChainResidue
BASP183
BASP191
BASP193

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN D 2001
ChainResidue
DCYS1112
DCYS1194
DCYS1201
DCYS1204

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN D 2002
ChainResidue
DCYS73
DCYS76
DCYS58
DCYS60

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG D 2003
ChainResidue
DASP739
DASP741
DASP743
DHOH2105
DHOH2106
DHOH2107

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG D 2004
ChainResidue
BHOH2101
BHOH2102
BHOH2103
DLYS840
DHOH2108
DHOH2109

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG D 2005
ChainResidue
DTRP897
DGLU898
DILE900

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG F 2001
ChainResidue
FALA292
FGLY296
FTRP299
FHOH2105

site_idAC8
Number of Residues24
DetailsBINDING SITE FOR GE23077
ChainResidue
AARG146
AILE158
APHE171
BALA8
BPRO27
BLEU186
BARG189
CPRO444
CGLU445
CGLY446
CASN448
CARG557
CMET560
CASN563
CGLN567
CLYS838
CLYS846
CHOH1314
DASP741
DHOH2104
DHOH2106
IHOH201
IHOH202
IHOH207

Functional Information from PROSITE/UniProt
site_idPS00716
Number of Residues27
DetailsSIGMA70_2 Sigma-70 factors family signature 2. TleEVGaffgVTrerIrQIEnkaLrkL
ChainResidueDetails
FTHR382-LEU408

site_idPS00867
Number of Residues8
DetailsCPSASE_2 Carbamoyl-phosphate synthase subdomain signature 2. LIEANLRL
ChainResidueDetails
FLEU187-LEU194

site_idPS01166
Number of Residues13
DetailsRNA_POL_BETA RNA polymerases beta chain signature. GdKLANrHGNKGV
ChainResidueDetails
CGLY836-VAL848

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues11
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01322
ChainResidueDetails
DASP739
DASP741
DASP743
DCYS1112
DCYS1194
DCYS1201
DCYS1204
DCYS58
DCYS60
DCYS73
DCYS76

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PDB entries from 2024-04-17

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