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4OI1

Clp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II)

Functional Information from GO Data
ChainGOidnamespacecontents
A0005524molecular_functionATP binding
A0005634cellular_componentnucleus
A0005849cellular_componentmRNA cleavage factor complex
A0006388biological_processtRNA splicing, via endonucleolytic cleavage and ligation
A0006396biological_processRNA processing
A0006397biological_processmRNA processing
A0031124biological_processmRNA 3'-end processing
A0051731molecular_functionpolynucleotide 5'-hydroxyl-kinase activity
A0051736molecular_functionATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity
Functional Information from PDB Data
site_idAC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE ADP A 501
ChainResidue
AGLU16
ASER282
AGLY284
AVAL285
AGLU286
AARG288
AMG502
AALF503
AHOH603
AHOH613
AHOH630
AARG56
AALA58
AASP124
AVAL125
AGLY126
ALYS127
ATHR128
ATHR129

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 502
ChainResidue
ATHR128
AADP501
AALF503
AHOH601
AHOH602
AHOH603

site_idAC3
Number of Residues14
DetailsBINDING SITE FOR RESIDUE ALF A 503
ChainResidue
ATHR123
AASP124
ALYS127
AASP151
AGLN154
AGLY232
AARG288
AARG293
AADP501
AMG502
AHOH601
AHOH602
AHOH603
BG1

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE 2PE A 504
ChainResidue
ATRP62
ALEU88
ATYR137
AGLN141

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03035
ChainResidueDetails
AARG56
AASP124
AGLU16

221051

PDB entries from 2024-06-12

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