4OEH
X-ray Structure of Uridine Phosphorylase from Vibrio cholerae Complexed with Uracil at 1.91 A Resolution
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0004850 | molecular_function | uridine phosphorylase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0009116 | biological_process | nucleoside metabolic process |
A | 0009164 | biological_process | nucleoside catabolic process |
A | 0009166 | biological_process | nucleotide catabolic process |
A | 0016757 | molecular_function | glycosyltransferase activity |
A | 0016763 | molecular_function | pentosyltransferase activity |
A | 0044206 | biological_process | UMP salvage |
A | 0046872 | molecular_function | metal ion binding |
B | 0003824 | molecular_function | catalytic activity |
B | 0004850 | molecular_function | uridine phosphorylase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0009116 | biological_process | nucleoside metabolic process |
B | 0009164 | biological_process | nucleoside catabolic process |
B | 0009166 | biological_process | nucleotide catabolic process |
B | 0016757 | molecular_function | glycosyltransferase activity |
B | 0016763 | molecular_function | pentosyltransferase activity |
B | 0044206 | biological_process | UMP salvage |
B | 0046872 | molecular_function | metal ion binding |
C | 0003824 | molecular_function | catalytic activity |
C | 0004850 | molecular_function | uridine phosphorylase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0009116 | biological_process | nucleoside metabolic process |
C | 0009164 | biological_process | nucleoside catabolic process |
C | 0009166 | biological_process | nucleotide catabolic process |
C | 0016757 | molecular_function | glycosyltransferase activity |
C | 0016763 | molecular_function | pentosyltransferase activity |
C | 0044206 | biological_process | UMP salvage |
C | 0046872 | molecular_function | metal ion binding |
D | 0003824 | molecular_function | catalytic activity |
D | 0004850 | molecular_function | uridine phosphorylase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0009116 | biological_process | nucleoside metabolic process |
D | 0009164 | biological_process | nucleoside catabolic process |
D | 0009166 | biological_process | nucleotide catabolic process |
D | 0016757 | molecular_function | glycosyltransferase activity |
D | 0016763 | molecular_function | pentosyltransferase activity |
D | 0044206 | biological_process | UMP salvage |
D | 0046872 | molecular_function | metal ion binding |
E | 0003824 | molecular_function | catalytic activity |
E | 0004850 | molecular_function | uridine phosphorylase activity |
E | 0005737 | cellular_component | cytoplasm |
E | 0009116 | biological_process | nucleoside metabolic process |
E | 0009164 | biological_process | nucleoside catabolic process |
E | 0009166 | biological_process | nucleotide catabolic process |
E | 0016757 | molecular_function | glycosyltransferase activity |
E | 0016763 | molecular_function | pentosyltransferase activity |
E | 0044206 | biological_process | UMP salvage |
E | 0046872 | molecular_function | metal ion binding |
F | 0003824 | molecular_function | catalytic activity |
F | 0004850 | molecular_function | uridine phosphorylase activity |
F | 0005737 | cellular_component | cytoplasm |
F | 0009116 | biological_process | nucleoside metabolic process |
F | 0009164 | biological_process | nucleoside catabolic process |
F | 0009166 | biological_process | nucleotide catabolic process |
F | 0016757 | molecular_function | glycosyltransferase activity |
F | 0016763 | molecular_function | pentosyltransferase activity |
F | 0044206 | biological_process | UMP salvage |
F | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE URA A 301 |
Chain | Residue |
A | THR94 |
A | GLY95 |
A | PHE161 |
A | GLN165 |
A | ARG167 |
A | GLU195 |
A | MET196 |
A | GOL302 |
A | HOH409 |
site_id | AC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A 302 |
Chain | Residue |
A | THR93 |
A | MET196 |
A | GLU197 |
A | URA301 |
A | HOH475 |
A | HOH548 |
B | HIS7 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 303 |
Chain | Residue |
A | GLN31 |
A | TYR52 |
A | HOH431 |
A | HOH603 |
A | HOH630 |
site_id | AC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EOH A 304 |
Chain | Residue |
A | LYS250 |
A | HOH442 |
site_id | AC5 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE URA B 301 |
Chain | Residue |
B | THR93 |
B | THR94 |
B | GLY95 |
B | PHE161 |
B | GLN165 |
B | ARG167 |
B | PHE194 |
B | GLU195 |
B | MET196 |
B | ILE220 |
B | GOL302 |
B | HOH411 |
site_id | AC6 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL B 302 |
Chain | Residue |
A | HIS7 |
B | THR93 |
B | GLU195 |
B | MET196 |
B | GLU197 |
B | URA301 |
B | HOH445 |
B | HOH514 |
site_id | AC7 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE PEG B 303 |
Chain | Residue |
B | PHE133 |
B | THR137 |
B | LYS140 |
B | HOH428 |
B | HOH471 |
B | HOH480 |
C | PHE133 |
C | THR137 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA B 304 |
Chain | Residue |
A | GLU48 |
A | ILE68 |
A | SER72 |
B | GLU48 |
B | ILE68 |
B | SER72 |
site_id | AC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL C 301 |
Chain | Residue |
C | PHE161 |
C | GLU197 |
C | HOH427 |
C | HOH483 |
C | HOH506 |
D | HIS7 |
site_id | BC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO C 302 |
Chain | Residue |
B | THR110 |
B | MET152 |
C | PRO131 |
C | ASP132 |
C | PHE133 |
C | EDO303 |
C | HOH548 |
site_id | BC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO C 303 |
Chain | Residue |
C | ASP132 |
C | ALA206 |
C | LEU210 |
C | EDO302 |
C | HOH413 |
C | HOH449 |
site_id | BC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL D 301 |
Chain | Residue |
C | HIS7 |
D | PHE161 |
D | GLU195 |
D | MET196 |
D | GLU197 |
D | HOH566 |
site_id | BC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA D 303 |
Chain | Residue |
C | GLU48 |
C | ILE68 |
C | SER72 |
D | GLU48 |
D | ILE68 |
D | SER72 |
site_id | BC5 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE URA E 301 |
Chain | Residue |
E | THR93 |
E | THR94 |
E | GLY95 |
E | PHE161 |
E | GLN165 |
E | ARG167 |
E | GLU195 |
E | MET196 |
E | ILE220 |
E | GOL302 |
E | HOH404 |
site_id | BC6 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL E 302 |
Chain | Residue |
E | THR93 |
E | GLU195 |
E | MET196 |
E | GLU197 |
E | URA301 |
E | HOH411 |
E | HOH559 |
F | HIS7 |
site_id | BC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO E 303 |
Chain | Residue |
E | HIS46 |
E | ARG47 |
F | ASP26 |
site_id | BC8 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE URA F 301 |
Chain | Residue |
F | GLY95 |
F | PHE161 |
F | GLN165 |
F | ARG167 |
F | GLU195 |
F | GOL302 |
F | HOH428 |
F | HOH444 |
site_id | BC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL F 302 |
Chain | Residue |
E | HIS7 |
F | THR93 |
F | GLU195 |
F | MET196 |
F | GLU197 |
F | URA301 |
F | HOH523 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL F 303 |
Chain | Residue |
F | ASP132 |
F | CYS205 |
F | GLY209 |
F | LEU210 |
F | HOH414 |
F | HOH423 |
site_id | CC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EOH F 304 |
Chain | Residue |
E | PHE6 |
F | ARG167 |
site_id | CC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA F 305 |
Chain | Residue |
E | GLU48 |
E | ILE68 |
E | SER72 |
F | GLU48 |
F | ILE68 |
F | SER72 |
Functional Information from PROSITE/UniProt
site_id | PS01232 |
Number of Residues | 16 |
Details | PNP_UDP_1 Purine and other phosphorylases family 1 signature. StGIGgPStSIaveEL |
Chain | Residue | Details |
A | SER65-LEU80 |