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4OBF

Crystal Structure of Nelfinavir-Resistant, Inactive HIV-1 Protease Variant (D30N/N88D) in Complex with the p1-p6 substrate variant (S451N)

Functional Information from GO Data
ChainGOidnamespacecontents
A0004190molecular_functionaspartic-type endopeptidase activity
A0006508biological_processproteolysis
B0004190molecular_functionaspartic-type endopeptidase activity
B0006508biological_processproteolysis
C0004190molecular_functionaspartic-type endopeptidase activity
C0006508biological_processproteolysis
D0004190molecular_functionaspartic-type endopeptidase activity
D0006508biological_processproteolysis
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 101
ChainResidue
ALYS7
AARG8
AHOH232
BARG87
EARG9

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 102
ChainResidue
AHOH241
AARG14
AILE15
AGLY16
AGLY17

site_idAC3
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO A 103
ChainResidue
ALYS70

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 104
ChainResidue
ALEU5
ATRP6
AHOH214
AHOH236
BARG87
BHOH226

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PO4 A 105
ChainResidue
AGLU35
AMET36
AASN37
AHOH226
BPRO39
BGLY40

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT A 106
ChainResidue
APRO1
AHOH223

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 101
ChainResidue
AARG87
BLYS7
BARG8

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO B 102
ChainResidue
BARG14
BGLY16
BGLY17

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL C 101
ChainResidue
CARG87
CHOH222
DTRP6
DLYS7
DARG8

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO C 102
ChainResidue
BGLY52
BPHE53
CILE72
CGLN92

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO C 103
ChainResidue
CLYS7
CARG8
DARG87
FARG9

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO C 104
ChainResidue
CASP29
CASN30
CVAL32
CILE47
FGLY3
FASN4

site_idBC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL D 101
ChainResidue
CGLY16
CPRO63
DARG14
DGLY16
DGLY17
DPRO63
DHOH218
DHOH243

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO D 102
ChainResidue
CPRO39
CGLY40
DMET36
DASN37
DHOH234

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 D 103
ChainResidue
BTRP42
BLYS55
BARG57
BHOH246
DVAL11
DTHR12
DCYS67

site_idBC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO E 101
ChainResidue
AARG8
EASN8
EARG9

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Cleavage; by viral protease => ECO:0000250
ChainResidueDetails
EPHE5
FPHE5
CASN25
DASN25

site_idSWS_FT_FI2
Number of Residues4
DetailsSITE: Cleavage; by viral protease => ECO:0000250
ChainResidueDetails
APHE99
BPHE99
CPHE99
DPHE99

219140

PDB entries from 2024-05-01

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