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4O7X

Crystal structure of human ALKBH5 in complex with Mn2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0006397biological_processmRNA processing
A0035515molecular_functionoxidative RNA demethylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 301
ChainResidue
AHIS204
AASP206
AHIS266
AHOH401
AHOH474
AHOH475

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"evidences":[{"source":"PubMed","id":"35333330","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"24778178","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"35333330","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4NRO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4OCT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7WKV","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"24616105","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"24778178","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"35333330","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"7V4G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7WKV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7WL0","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine; by MAPK8 and MAPK9","evidences":[{"source":"PubMed","id":"34048572","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"37369679","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1)","evidences":[{"source":"PubMed","id":"34048572","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

238895

PDB entries from 2025-07-16

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