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4O7X

Crystal structure of human ALKBH5 in complex with Mn2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0006397biological_processmRNA processing
A0035515molecular_functionoxidative RNA demethylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 301
ChainResidue
AHIS204
AASP206
AHIS266
AHOH401
AHOH474
AHOH475

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: ACT_SITE => ECO:0000269|PubMed:35333330
ChainResidueDetails
ATYR139

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:24778178, ECO:0000269|PubMed:35333330, ECO:0007744|PDB:4NRO, ECO:0007744|PDB:4OCT, ECO:0007744|PDB:7WKV
ChainResidueDetails
AASN193
ATYR195
AARG277

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000305|PubMed:24616105, ECO:0000305|PubMed:24778178, ECO:0000305|PubMed:35333330, ECO:0007744|PDB:7V4G, ECO:0007744|PDB:7WKV, ECO:0007744|PDB:7WL0
ChainResidueDetails
AHIS204
AASP206
AHIS266

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18669648
ChainResidueDetails
ASER69

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Phosphotyrosine => ECO:0007744|PubMed:19690332
ChainResidueDetails
ATYR71

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: Phosphoserine; by MAPK8 and MAPK9 => ECO:0000269|PubMed:34048572
ChainResidueDetails
ASER87

site_idSWS_FT_FI7
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
ALYS132

site_idSWS_FT_FI8
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:37369679
ChainResidueDetails
ALYS235

site_idSWS_FT_FI9
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1) => ECO:0000269|PubMed:34048572
ChainResidueDetails
ALYS86

222415

PDB entries from 2024-07-10

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