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4O11

Crystal structure of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with 6-hydroxyuridine 5'-monophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE BMP A 301
ChainResidue
AASP20
AARG203
AHOH405
AHOH408
AHOH411
AHOH412
AHOH415
AHOH417
AHOH420
BASP75
BILE76
ALYS42
BTHR79
AASP70
ALYS72
AMET126
ASER127
APRO180
AGLN185
AGLY202

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 302
ChainResidue
AGLU78
AHOH515
BHOH475
BHOH547

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 303
ChainResidue
AASP104
BGLY130

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 304
ChainResidue
AASN210
AHOH427
AHOH429
AHOH491
BTHR159
BPRO161
BGLY186
BHOH595
BHOH608

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 305
ChainResidue
AASP209
AASN210
AALA214
AHOH589
BGLU162

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 306
ChainResidue
ATYR37
AASN210
BHOH434
BHOH486

site_idAC7
Number of Residues20
DetailsBINDING SITE FOR RESIDUE BMP B 301
ChainResidue
AASP75
AILE76
ATHR79
BASP20
BLYS42
BASP70
BLYS72
BMET126
BSER127
BPRO180
BGLN185
BGLY202
BARG203
BHOH404
BHOH406
BHOH407
BHOH410
BHOH419
BHOH421
BHOH451

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 302
ChainResidue
AGLY130
BASP104

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 303
ChainResidue
BASP104
BARG107
BLEU149

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 304
ChainResidue
BSER221
BHOH466
BHOH467
BHOH535
BHOH544
BHOH629

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IIaDfKvaDIPeTN
ChainResidueDetails
AILE67-ASN80

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor
ChainResidueDetails
ALYS72
BLYS72

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING:
ChainResidueDetails
BLYS42
BASP70
BSER127
BPRO180
BGLY202
BARG203
AASP20
ALYS42
AASP70
ASER127
APRO180
AGLY202
AARG203
BASP20

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PDB entries from 2024-05-15

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