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4NX5

Crystal structure of orotidine 5'-monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with 6-azauridine 5'-monophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE UP6 A 301
ChainResidue
AASP20
AARG203
AHOH405
AHOH410
AHOH413
AHOH416
AHOH419
AHOH420
BASP75
BILE76
BTHR79
ALYS42
AASP70
ALYS72
AMET126
ASER127
APRO180
AGLN185
AGLY202

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 302
ChainResidue
AASP104
AARG107
BGLY130

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 303
ChainResidue
APRO77
AGLU78
BHOH482
BHOH571

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 304
ChainResidue
AASP140
AARG144
AARG166
AILE170
AHOH558
AHOH591

site_idAC5
Number of Residues19
DetailsBINDING SITE FOR RESIDUE UP6 B 301
ChainResidue
AASP75
AILE76
ATHR79
BASP20
BLYS42
BASP70
BLYS72
BMET126
BSER127
BPRO180
BGLN185
BGLY202
BARG203
BHOH407
BHOH410
BHOH411
BHOH413
BHOH419
BHOH426

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 302
ChainResidue
AGLY130
BASP104
BGOL305

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 303
ChainResidue
AHOH486
BPRO77
BGLU78

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 304
ChainResidue
AGLU33
AASN210
AALA212
AHOH427
AHOH430
AHOH483
BTHR159
BPRO161

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 305
ChainResidue
BASP104
BARG107
BLEU149
BCL302

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 306
ChainResidue
BHOH523
BHOH596
BHOH623
BHOH624
BHOH625

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 307
ChainResidue
BSER221
BHOH467
BHOH477
BHOH518
BHOH626
BHOH627

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IIaDfKvaDIPeTN
ChainResidueDetails
AILE67-ASN80

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor
ChainResidueDetails
ALYS72
BLYS72

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING:
ChainResidueDetails
AASP20
BASP70
BSER127
BPRO180
BGLY202
BARG203
ALYS42
AASP70
ASER127
APRO180
AGLY202
AARG203
BASP20
BLYS42

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PDB entries from 2024-07-24

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