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4NUW

Crystal structure of orotidine 5'-monophosphate decarboxylase from methanobacterium thermoautotrophicum complexed with uridine 5'-monophosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE U5P A 301
ChainResidue
AASP20
AARG203
AHOH405
AHOH406
AHOH408
AHOH414
AHOH415
AHOH424
BASP75
BILE76
BTHR79
ALYS42
AASP70
ALYS72
AMET126
ASER127
APRO180
AGLN185
AGLY202

site_idAC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 302
ChainResidue
AGLU33
AASN210
AHOH429
AHOH432
AHOH560
BSER158
BTHR159
BPRO161
BGLY186
BHOH442

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 303
ChainResidue
AGLN185
AARG203
AHOH413

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 304
ChainResidue
AALA103
AASP104
AARG107
ALEU149

site_idAC5
Number of Residues19
DetailsBINDING SITE FOR RESIDUE U5P B 301
ChainResidue
AASP75
AILE76
ATHR79
BASP20
BLYS42
BASP70
BLYS72
BMET126
BSER127
BPRO180
BGLN185
BGLY202
BARG203
BHOH402
BHOH405
BHOH407
BHOH417
BHOH420
BHOH440

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IIaDfKvaDIPeTN
ChainResidueDetails
AILE67-ASN80

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor
ChainResidueDetails
ALYS72
BLYS72

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING:
ChainResidueDetails
AASP20
BASP70
BSER127
BPRO180
BGLY202
BARG203
ALYS42
AASP70
ASER127
APRO180
AGLY202
AARG203
BASP20
BLYS42

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PDB entries from 2024-07-24

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