4NS1
Crystal structure of purine nucleoside phosphorylase from Porphyromonas gingivalis ATCC 33277, NYSGRC Target 30972
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0004731 | molecular_function | purine-nucleoside phosphorylase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0006139 | biological_process | nucleobase-containing compound metabolic process |
A | 0009116 | biological_process | nucleoside metabolic process |
A | 0016757 | molecular_function | glycosyltransferase activity |
A | 0016763 | molecular_function | pentosyltransferase activity |
B | 0003824 | molecular_function | catalytic activity |
B | 0004731 | molecular_function | purine-nucleoside phosphorylase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006139 | biological_process | nucleobase-containing compound metabolic process |
B | 0009116 | biological_process | nucleoside metabolic process |
B | 0016757 | molecular_function | glycosyltransferase activity |
B | 0016763 | molecular_function | pentosyltransferase activity |
C | 0003824 | molecular_function | catalytic activity |
C | 0004731 | molecular_function | purine-nucleoside phosphorylase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0006139 | biological_process | nucleobase-containing compound metabolic process |
C | 0009116 | biological_process | nucleoside metabolic process |
C | 0016757 | molecular_function | glycosyltransferase activity |
C | 0016763 | molecular_function | pentosyltransferase activity |
D | 0003824 | molecular_function | catalytic activity |
D | 0004731 | molecular_function | purine-nucleoside phosphorylase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0006139 | biological_process | nucleobase-containing compound metabolic process |
D | 0009116 | biological_process | nucleoside metabolic process |
D | 0016757 | molecular_function | glycosyltransferase activity |
D | 0016763 | molecular_function | pentosyltransferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE DA A 301 |
Chain | Residue |
A | ALA129 |
A | ASN250 |
A | HOH716 |
A | ALA130 |
A | GLY131 |
A | GLU208 |
A | TYR213 |
A | ILE224 |
A | GLY225 |
A | MSE226 |
A | THR249 |
site_id | AC2 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SO4 A 302 |
Chain | Residue |
A | GLY45 |
A | SER46 |
A | ARG97 |
A | HIS99 |
A | ASN128 |
A | ALA129 |
A | SER227 |
A | HOH565 |
A | HOH650 |
site_id | AC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A 303 |
Chain | Residue |
A | ARG236 |
A | HOH437 |
A | HOH446 |
A | HOH474 |
A | HOH530 |
A | HOH543 |
A | HOH670 |
site_id | AC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL A 304 |
Chain | Residue |
A | HIS254 |
A | PHE255 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL A 305 |
Chain | Residue |
A | ILE55 |
A | GLU56 |
A | ASN57 |
A | LYS58 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 A 306 |
Chain | Residue |
A | GLN218 |
B | GLN218 |
C | GLN218 |
site_id | AC7 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE DA B 301 |
Chain | Residue |
B | ALA129 |
B | ALA130 |
B | GLY131 |
B | GLU208 |
B | TYR213 |
B | ILE224 |
B | GLY225 |
B | MSE226 |
B | THR249 |
B | ASN250 |
B | HOH639 |
site_id | AC8 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE SO4 B 302 |
Chain | Residue |
B | GLY45 |
B | SER46 |
B | ARG97 |
B | HIS99 |
B | ASN128 |
B | ALA129 |
B | SER227 |
B | HOH591 |
B | HOH599 |
B | HOH601 |
site_id | AC9 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE GOL B 303 |
Chain | Residue |
B | HIS254 |
B | PHE255 |
site_id | BC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL B 304 |
Chain | Residue |
B | ARG236 |
B | GLY239 |
B | HOH417 |
B | HOH506 |
B | HOH542 |
B | HOH596 |
B | HOH775 |
site_id | BC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL B 305 |
Chain | Residue |
A | ILE186 |
A | GLU189 |
A | ARG283 |
A | ALA287 |
B | ILE186 |
B | GLU189 |
B | ARG283 |
site_id | BC3 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE DA C 301 |
Chain | Residue |
C | ALA129 |
C | ALA130 |
C | GLY131 |
C | GLU208 |
C | TYR213 |
C | ILE224 |
C | GLY225 |
C | MSE226 |
C | THR249 |
C | ASN250 |
C | HOH597 |
site_id | BC4 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE SO4 C 302 |
Chain | Residue |
C | GLY45 |
C | SER46 |
C | ARG97 |
C | HIS99 |
C | ASN128 |
C | ALA129 |
C | SER227 |
C | HOH516 |
C | HOH553 |
C | HOH566 |
site_id | BC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL C 303 |
Chain | Residue |
C | HIS254 |
C | PHE255 |
C | HOH403 |
site_id | BC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL C 304 |
Chain | Residue |
C | LYS58 |
C | GLU56 |
C | ASN57 |
site_id | BC7 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL C 305 |
Chain | Residue |
C | ARG236 |
C | GLY239 |
C | HOH463 |
C | HOH526 |
C | HOH586 |
C | HOH665 |
C | HOH683 |
site_id | BC8 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE DA D 301 |
Chain | Residue |
D | ALA129 |
D | ALA130 |
D | GLY131 |
D | GLU208 |
D | TYR213 |
D | ILE224 |
D | GLY225 |
D | MSE226 |
D | THR249 |
D | ASN250 |
D | HOH733 |
site_id | BC9 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE SO4 D 302 |
Chain | Residue |
D | GLY45 |
D | SER46 |
D | ARG97 |
D | HIS99 |
D | ASN128 |
D | ALA129 |
D | SER227 |
D | HOH670 |
D | HOH677 |
D | HOH740 |
site_id | CC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 D 303 |
Chain | Residue |
D | GLN218 |
D | GLN218 |
D | GLN218 |
site_id | CC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 D 304 |
Chain | Residue |
D | ASN151 |
D | ASN151 |
D | ASN151 |
D | TRP216 |
D | TRP216 |
D | TRP216 |
site_id | CC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL D 305 |
Chain | Residue |
D | HIS254 |
D | PHE255 |
D | HOH404 |
site_id | CC4 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE GOL D 306 |
Chain | Residue |
D | ARG236 |
D | GLY239 |
D | ARG241 |
D | HOH410 |
D | HOH498 |
D | HOH547 |
D | HOH678 |
D | HOH720 |
D | HOH741 |
Functional Information from PROSITE/UniProt
site_id | PS01240 |
Number of Residues | 42 |
Details | PNP_MTAP_2 Purine and other phosphorylases family 2 signature. VamqGrfHyYegysMdqvTfpIrVmkllGien.LFvsNAaGGI |
Chain | Residue | Details |
A | VAL92-ILE133 |