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4NQX

Crystal Structure of HLA A*0101 in complex with NP44-S7N, an 9-mer influenza epitope

Functional Information from GO Data
ChainGOidnamespacecontents
B0000139cellular_componentGolgi membrane
B0001913biological_processT cell mediated cytotoxicity
B0001916biological_processpositive regulation of T cell mediated cytotoxicity
B0002237biological_processresponse to molecule of bacterial origin
B0002376biological_processimmune system process
B0002474biological_processantigen processing and presentation of peptide antigen via MHC class I
B0002481biological_processantigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
B0002502biological_processpeptide antigen assembly with MHC class I protein complex
B0002503biological_processpeptide antigen assembly with MHC class II protein complex
B0002726biological_processpositive regulation of T cell cytokine production
B0005198molecular_functionstructural molecule activity
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005615cellular_componentextracellular space
B0005765cellular_componentlysosomal membrane
B0005783cellular_componentendoplasmic reticulum
B0005788cellular_componentendoplasmic reticulum lumen
B0005794cellular_componentGolgi apparatus
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0005925cellular_componentfocal adhesion
B0006826biological_processiron ion transport
B0006879biological_processintracellular iron ion homeostasis
B0006955biological_processimmune response
B0007608biological_processsensory perception of smell
B0007611biological_processlearning or memory
B0009897cellular_componentexternal side of plasma membrane
B0009986cellular_componentcell surface
B0010038biological_processresponse to metal ion
B0010977biological_processnegative regulation of neuron projection development
B0012507cellular_componentER to Golgi transport vesicle membrane
B0016020cellular_componentmembrane
B0019885biological_processantigen processing and presentation of endogenous peptide antigen via MHC class I
B0019886biological_processantigen processing and presentation of exogenous peptide antigen via MHC class II
B0023026molecular_functionMHC class II protein complex binding
B0030670cellular_componentphagocytic vesicle membrane
B0031901cellular_componentearly endosome membrane
B0031902cellular_componentlate endosome membrane
B0031905cellular_componentearly endosome lumen
B0033077biological_processT cell differentiation in thymus
B0033572biological_processtransferrin transport
B0034756biological_processregulation of iron ion transport
B0034757biological_processnegative regulation of iron ion transport
B0035580cellular_componentspecific granule lumen
B0042026biological_processprotein refolding
B0042605molecular_functionpeptide antigen binding
B0042612cellular_componentMHC class I protein complex
B0042613cellular_componentMHC class II protein complex
B0042802molecular_functionidentical protein binding
B0042803molecular_functionprotein homodimerization activity
B0042824cellular_componentMHC class I peptide loading complex
B0045646biological_processregulation of erythrocyte differentiation
B0048260biological_processpositive regulation of receptor-mediated endocytosis
B0048261biological_processnegative regulation of receptor-mediated endocytosis
B0050680biological_processnegative regulation of epithelial cell proliferation
B0050768biological_processnegative regulation of neurogenesis
B0050778biological_processpositive regulation of immune response
B0050870biological_processpositive regulation of T cell activation
B0051289biological_processprotein homotetramerization
B0055038cellular_componentrecycling endosome membrane
B0060586biological_processmulticellular organismal-level iron ion homeostasis
B0070062cellular_componentextracellular exosome
B0071281biological_processcellular response to iron ion
B0071283biological_processcellular response to iron(III) ion
B0071316biological_processcellular response to nicotine
B1904724cellular_componenttertiary granule lumen
B1990000biological_processamyloid fibril formation
B1990712cellular_componentHFE-transferrin receptor complex
B2000774biological_processpositive regulation of cellular senescence
B2000978biological_processnegative regulation of forebrain neuron differentiation
D0000139cellular_componentGolgi membrane
D0001913biological_processT cell mediated cytotoxicity
D0001916biological_processpositive regulation of T cell mediated cytotoxicity
D0002237biological_processresponse to molecule of bacterial origin
D0002376biological_processimmune system process
D0002474biological_processantigen processing and presentation of peptide antigen via MHC class I
D0002481biological_processantigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
D0002502biological_processpeptide antigen assembly with MHC class I protein complex
D0002503biological_processpeptide antigen assembly with MHC class II protein complex
D0002726biological_processpositive regulation of T cell cytokine production
D0005198molecular_functionstructural molecule activity
D0005515molecular_functionprotein binding
D0005576cellular_componentextracellular region
D0005615cellular_componentextracellular space
D0005765cellular_componentlysosomal membrane
D0005783cellular_componentendoplasmic reticulum
D0005788cellular_componentendoplasmic reticulum lumen
D0005794cellular_componentGolgi apparatus
D0005829cellular_componentcytosol
D0005886cellular_componentplasma membrane
D0005925cellular_componentfocal adhesion
D0006826biological_processiron ion transport
D0006879biological_processintracellular iron ion homeostasis
D0006955biological_processimmune response
D0007608biological_processsensory perception of smell
D0007611biological_processlearning or memory
D0009897cellular_componentexternal side of plasma membrane
D0009986cellular_componentcell surface
D0010038biological_processresponse to metal ion
D0010977biological_processnegative regulation of neuron projection development
D0012507cellular_componentER to Golgi transport vesicle membrane
D0016020cellular_componentmembrane
D0019885biological_processantigen processing and presentation of endogenous peptide antigen via MHC class I
D0019886biological_processantigen processing and presentation of exogenous peptide antigen via MHC class II
D0023026molecular_functionMHC class II protein complex binding
D0030670cellular_componentphagocytic vesicle membrane
D0031901cellular_componentearly endosome membrane
D0031902cellular_componentlate endosome membrane
D0031905cellular_componentearly endosome lumen
D0033077biological_processT cell differentiation in thymus
D0033572biological_processtransferrin transport
D0034756biological_processregulation of iron ion transport
D0034757biological_processnegative regulation of iron ion transport
D0035580cellular_componentspecific granule lumen
D0042026biological_processprotein refolding
D0042605molecular_functionpeptide antigen binding
D0042612cellular_componentMHC class I protein complex
D0042613cellular_componentMHC class II protein complex
D0042802molecular_functionidentical protein binding
D0042803molecular_functionprotein homodimerization activity
D0042824cellular_componentMHC class I peptide loading complex
D0045646biological_processregulation of erythrocyte differentiation
D0048260biological_processpositive regulation of receptor-mediated endocytosis
D0048261biological_processnegative regulation of receptor-mediated endocytosis
D0050680biological_processnegative regulation of epithelial cell proliferation
D0050768biological_processnegative regulation of neurogenesis
D0050778biological_processpositive regulation of immune response
D0050870biological_processpositive regulation of T cell activation
D0051289biological_processprotein homotetramerization
D0055038cellular_componentrecycling endosome membrane
D0060586biological_processmulticellular organismal-level iron ion homeostasis
D0070062cellular_componentextracellular exosome
D0071281biological_processcellular response to iron ion
D0071283biological_processcellular response to iron(III) ion
D0071316biological_processcellular response to nicotine
D1904724cellular_componenttertiary granule lumen
D1990000biological_processamyloid fibril formation
D1990712cellular_componentHFE-transferrin receptor complex
D2000774biological_processpositive regulation of cellular senescence
D2000978biological_processnegative regulation of forebrain neuron differentiation
F0000139cellular_componentGolgi membrane
F0001913biological_processT cell mediated cytotoxicity
F0001916biological_processpositive regulation of T cell mediated cytotoxicity
F0002237biological_processresponse to molecule of bacterial origin
F0002376biological_processimmune system process
F0002474biological_processantigen processing and presentation of peptide antigen via MHC class I
F0002481biological_processantigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
F0002502biological_processpeptide antigen assembly with MHC class I protein complex
F0002503biological_processpeptide antigen assembly with MHC class II protein complex
F0002726biological_processpositive regulation of T cell cytokine production
F0005198molecular_functionstructural molecule activity
F0005515molecular_functionprotein binding
F0005576cellular_componentextracellular region
F0005615cellular_componentextracellular space
F0005765cellular_componentlysosomal membrane
F0005783cellular_componentendoplasmic reticulum
F0005788cellular_componentendoplasmic reticulum lumen
F0005794cellular_componentGolgi apparatus
F0005829cellular_componentcytosol
F0005886cellular_componentplasma membrane
F0005925cellular_componentfocal adhesion
F0006826biological_processiron ion transport
F0006879biological_processintracellular iron ion homeostasis
F0006955biological_processimmune response
F0007608biological_processsensory perception of smell
F0007611biological_processlearning or memory
F0009897cellular_componentexternal side of plasma membrane
F0009986cellular_componentcell surface
F0010038biological_processresponse to metal ion
F0010977biological_processnegative regulation of neuron projection development
F0012507cellular_componentER to Golgi transport vesicle membrane
F0016020cellular_componentmembrane
F0019885biological_processantigen processing and presentation of endogenous peptide antigen via MHC class I
F0019886biological_processantigen processing and presentation of exogenous peptide antigen via MHC class II
F0023026molecular_functionMHC class II protein complex binding
F0030670cellular_componentphagocytic vesicle membrane
F0031901cellular_componentearly endosome membrane
F0031902cellular_componentlate endosome membrane
F0031905cellular_componentearly endosome lumen
F0033077biological_processT cell differentiation in thymus
F0033572biological_processtransferrin transport
F0034756biological_processregulation of iron ion transport
F0034757biological_processnegative regulation of iron ion transport
F0035580cellular_componentspecific granule lumen
F0042026biological_processprotein refolding
F0042605molecular_functionpeptide antigen binding
F0042612cellular_componentMHC class I protein complex
F0042613cellular_componentMHC class II protein complex
F0042802molecular_functionidentical protein binding
F0042803molecular_functionprotein homodimerization activity
F0042824cellular_componentMHC class I peptide loading complex
F0045646biological_processregulation of erythrocyte differentiation
F0048260biological_processpositive regulation of receptor-mediated endocytosis
F0048261biological_processnegative regulation of receptor-mediated endocytosis
F0050680biological_processnegative regulation of epithelial cell proliferation
F0050768biological_processnegative regulation of neurogenesis
F0050778biological_processpositive regulation of immune response
F0050870biological_processpositive regulation of T cell activation
F0051289biological_processprotein homotetramerization
F0055038cellular_componentrecycling endosome membrane
F0060586biological_processmulticellular organismal-level iron ion homeostasis
F0070062cellular_componentextracellular exosome
F0071281biological_processcellular response to iron ion
F0071283biological_processcellular response to iron(III) ion
F0071316biological_processcellular response to nicotine
F1904724cellular_componenttertiary granule lumen
F1990000biological_processamyloid fibril formation
F1990712cellular_componentHFE-transferrin receptor complex
F2000774biological_processpositive regulation of cellular senescence
F2000978biological_processnegative regulation of forebrain neuron differentiation
H0000139cellular_componentGolgi membrane
H0001913biological_processT cell mediated cytotoxicity
H0001916biological_processpositive regulation of T cell mediated cytotoxicity
H0002237biological_processresponse to molecule of bacterial origin
H0002376biological_processimmune system process
H0002474biological_processantigen processing and presentation of peptide antigen via MHC class I
H0002481biological_processantigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
H0002502biological_processpeptide antigen assembly with MHC class I protein complex
H0002503biological_processpeptide antigen assembly with MHC class II protein complex
H0002726biological_processpositive regulation of T cell cytokine production
H0005198molecular_functionstructural molecule activity
H0005515molecular_functionprotein binding
H0005576cellular_componentextracellular region
H0005615cellular_componentextracellular space
H0005765cellular_componentlysosomal membrane
H0005783cellular_componentendoplasmic reticulum
H0005788cellular_componentendoplasmic reticulum lumen
H0005794cellular_componentGolgi apparatus
H0005829cellular_componentcytosol
H0005886cellular_componentplasma membrane
H0005925cellular_componentfocal adhesion
H0006826biological_processiron ion transport
H0006879biological_processintracellular iron ion homeostasis
H0006955biological_processimmune response
H0007608biological_processsensory perception of smell
H0007611biological_processlearning or memory
H0009897cellular_componentexternal side of plasma membrane
H0009986cellular_componentcell surface
H0010038biological_processresponse to metal ion
H0010977biological_processnegative regulation of neuron projection development
H0012507cellular_componentER to Golgi transport vesicle membrane
H0016020cellular_componentmembrane
H0019885biological_processantigen processing and presentation of endogenous peptide antigen via MHC class I
H0019886biological_processantigen processing and presentation of exogenous peptide antigen via MHC class II
H0023026molecular_functionMHC class II protein complex binding
H0030670cellular_componentphagocytic vesicle membrane
H0031901cellular_componentearly endosome membrane
H0031902cellular_componentlate endosome membrane
H0031905cellular_componentearly endosome lumen
H0033077biological_processT cell differentiation in thymus
H0033572biological_processtransferrin transport
H0034756biological_processregulation of iron ion transport
H0034757biological_processnegative regulation of iron ion transport
H0035580cellular_componentspecific granule lumen
H0042026biological_processprotein refolding
H0042605molecular_functionpeptide antigen binding
H0042612cellular_componentMHC class I protein complex
H0042613cellular_componentMHC class II protein complex
H0042802molecular_functionidentical protein binding
H0042803molecular_functionprotein homodimerization activity
H0042824cellular_componentMHC class I peptide loading complex
H0045646biological_processregulation of erythrocyte differentiation
H0048260biological_processpositive regulation of receptor-mediated endocytosis
H0048261biological_processnegative regulation of receptor-mediated endocytosis
H0050680biological_processnegative regulation of epithelial cell proliferation
H0050768biological_processnegative regulation of neurogenesis
H0050778biological_processpositive regulation of immune response
H0050870biological_processpositive regulation of T cell activation
H0051289biological_processprotein homotetramerization
H0055038cellular_componentrecycling endosome membrane
H0060586biological_processmulticellular organismal-level iron ion homeostasis
H0070062cellular_componentextracellular exosome
H0071281biological_processcellular response to iron ion
H0071283biological_processcellular response to iron(III) ion
H0071316biological_processcellular response to nicotine
H1904724cellular_componenttertiary granule lumen
H1990000biological_processamyloid fibril formation
H1990712cellular_componentHFE-transferrin receptor complex
H2000774biological_processpositive regulation of cellular senescence
H2000978biological_processnegative regulation of forebrain neuron differentiation
J0000139cellular_componentGolgi membrane
J0001913biological_processT cell mediated cytotoxicity
J0001916biological_processpositive regulation of T cell mediated cytotoxicity
J0002237biological_processresponse to molecule of bacterial origin
J0002376biological_processimmune system process
J0002474biological_processantigen processing and presentation of peptide antigen via MHC class I
J0002481biological_processantigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
J0002502biological_processpeptide antigen assembly with MHC class I protein complex
J0002503biological_processpeptide antigen assembly with MHC class II protein complex
J0002726biological_processpositive regulation of T cell cytokine production
J0005198molecular_functionstructural molecule activity
J0005515molecular_functionprotein binding
J0005576cellular_componentextracellular region
J0005615cellular_componentextracellular space
J0005765cellular_componentlysosomal membrane
J0005783cellular_componentendoplasmic reticulum
J0005788cellular_componentendoplasmic reticulum lumen
J0005794cellular_componentGolgi apparatus
J0005829cellular_componentcytosol
J0005886cellular_componentplasma membrane
J0005925cellular_componentfocal adhesion
J0006826biological_processiron ion transport
J0006879biological_processintracellular iron ion homeostasis
J0006955biological_processimmune response
J0007608biological_processsensory perception of smell
J0007611biological_processlearning or memory
J0009897cellular_componentexternal side of plasma membrane
J0009986cellular_componentcell surface
J0010038biological_processresponse to metal ion
J0010977biological_processnegative regulation of neuron projection development
J0012507cellular_componentER to Golgi transport vesicle membrane
J0016020cellular_componentmembrane
J0019885biological_processantigen processing and presentation of endogenous peptide antigen via MHC class I
J0019886biological_processantigen processing and presentation of exogenous peptide antigen via MHC class II
J0023026molecular_functionMHC class II protein complex binding
J0030670cellular_componentphagocytic vesicle membrane
J0031901cellular_componentearly endosome membrane
J0031902cellular_componentlate endosome membrane
J0031905cellular_componentearly endosome lumen
J0033077biological_processT cell differentiation in thymus
J0033572biological_processtransferrin transport
J0034756biological_processregulation of iron ion transport
J0034757biological_processnegative regulation of iron ion transport
J0035580cellular_componentspecific granule lumen
J0042026biological_processprotein refolding
J0042605molecular_functionpeptide antigen binding
J0042612cellular_componentMHC class I protein complex
J0042613cellular_componentMHC class II protein complex
J0042802molecular_functionidentical protein binding
J0042803molecular_functionprotein homodimerization activity
J0042824cellular_componentMHC class I peptide loading complex
J0045646biological_processregulation of erythrocyte differentiation
J0048260biological_processpositive regulation of receptor-mediated endocytosis
J0048261biological_processnegative regulation of receptor-mediated endocytosis
J0050680biological_processnegative regulation of epithelial cell proliferation
J0050768biological_processnegative regulation of neurogenesis
J0050778biological_processpositive regulation of immune response
J0050870biological_processpositive regulation of T cell activation
J0051289biological_processprotein homotetramerization
J0055038cellular_componentrecycling endosome membrane
J0060586biological_processmulticellular organismal-level iron ion homeostasis
J0070062cellular_componentextracellular exosome
J0071281biological_processcellular response to iron ion
J0071283biological_processcellular response to iron(III) ion
J0071316biological_processcellular response to nicotine
J1904724cellular_componenttertiary granule lumen
J1990000biological_processamyloid fibril formation
J1990712cellular_componentHFE-transferrin receptor complex
J2000774biological_processpositive regulation of cellular senescence
J2000978biological_processnegative regulation of forebrain neuron differentiation
L0000139cellular_componentGolgi membrane
L0001913biological_processT cell mediated cytotoxicity
L0001916biological_processpositive regulation of T cell mediated cytotoxicity
L0002237biological_processresponse to molecule of bacterial origin
L0002376biological_processimmune system process
L0002474biological_processantigen processing and presentation of peptide antigen via MHC class I
L0002481biological_processantigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
L0002502biological_processpeptide antigen assembly with MHC class I protein complex
L0002503biological_processpeptide antigen assembly with MHC class II protein complex
L0002726biological_processpositive regulation of T cell cytokine production
L0005198molecular_functionstructural molecule activity
L0005515molecular_functionprotein binding
L0005576cellular_componentextracellular region
L0005615cellular_componentextracellular space
L0005765cellular_componentlysosomal membrane
L0005783cellular_componentendoplasmic reticulum
L0005788cellular_componentendoplasmic reticulum lumen
L0005794cellular_componentGolgi apparatus
L0005829cellular_componentcytosol
L0005886cellular_componentplasma membrane
L0005925cellular_componentfocal adhesion
L0006826biological_processiron ion transport
L0006879biological_processintracellular iron ion homeostasis
L0006955biological_processimmune response
L0007608biological_processsensory perception of smell
L0007611biological_processlearning or memory
L0009897cellular_componentexternal side of plasma membrane
L0009986cellular_componentcell surface
L0010038biological_processresponse to metal ion
L0010977biological_processnegative regulation of neuron projection development
L0012507cellular_componentER to Golgi transport vesicle membrane
L0016020cellular_componentmembrane
L0019885biological_processantigen processing and presentation of endogenous peptide antigen via MHC class I
L0019886biological_processantigen processing and presentation of exogenous peptide antigen via MHC class II
L0023026molecular_functionMHC class II protein complex binding
L0030670cellular_componentphagocytic vesicle membrane
L0031901cellular_componentearly endosome membrane
L0031902cellular_componentlate endosome membrane
L0031905cellular_componentearly endosome lumen
L0033077biological_processT cell differentiation in thymus
L0033572biological_processtransferrin transport
L0034756biological_processregulation of iron ion transport
L0034757biological_processnegative regulation of iron ion transport
L0035580cellular_componentspecific granule lumen
L0042026biological_processprotein refolding
L0042605molecular_functionpeptide antigen binding
L0042612cellular_componentMHC class I protein complex
L0042613cellular_componentMHC class II protein complex
L0042802molecular_functionidentical protein binding
L0042803molecular_functionprotein homodimerization activity
L0042824cellular_componentMHC class I peptide loading complex
L0045646biological_processregulation of erythrocyte differentiation
L0048260biological_processpositive regulation of receptor-mediated endocytosis
L0048261biological_processnegative regulation of receptor-mediated endocytosis
L0050680biological_processnegative regulation of epithelial cell proliferation
L0050768biological_processnegative regulation of neurogenesis
L0050778biological_processpositive regulation of immune response
L0050870biological_processpositive regulation of T cell activation
L0051289biological_processprotein homotetramerization
L0055038cellular_componentrecycling endosome membrane
L0060586biological_processmulticellular organismal-level iron ion homeostasis
L0070062cellular_componentextracellular exosome
L0071281biological_processcellular response to iron ion
L0071283biological_processcellular response to iron(III) ion
L0071316biological_processcellular response to nicotine
L1904724cellular_componenttertiary granule lumen
L1990000biological_processamyloid fibril formation
L1990712cellular_componentHFE-transferrin receptor complex
L2000774biological_processpositive regulation of cellular senescence
L2000978biological_processnegative regulation of forebrain neuron differentiation
Functional Information from PROSITE/UniProt
site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YTCHVQH
ChainResidueDetails
ATYR257-HIS263
BTYR78-HIS84

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues516
DetailsDomain: {"description":"Ig-like C1-type","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues534
DetailsRegion: {"description":"Alpha-1","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues546
DetailsRegion: {"description":"Alpha-2","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues546
DetailsRegion: {"description":"Alpha-3","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues36
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"21943705","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"21543847","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues6
DetailsModified residue: {"description":"Sulfotyrosine","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues6
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"source":"PubMed","id":"19159218","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues528
DetailsDomain: {"description":"Ig-like C1-type"}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues6
DetailsModified residue: {"description":"Pyrrolidone carboxylic acid; in form pI 5.3","evidences":[{"source":"PubMed","id":"7554280","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues6
DetailsGlycosylation: {"description":"N-linked (Glc) (glycation) isoleucine; in hemodialysis-associated amyloidosis","evidences":[{"source":"PubMed","id":"7918443","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues36
DetailsGlycosylation: {"description":"N-linked (Glc) (glycation) lysine; in vitro","evidences":[{"source":"PubMed","id":"7918443","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

239492

PDB entries from 2025-07-30

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