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4NPM

Crystal structure of Zebrafish ALKBH5 in complex with succinic acid

Functional Information from GO Data
ChainGOidnamespacecontents
A0006397biological_processmRNA processing
A0035515molecular_functionoxidative RNA demethylase activity
B0006397biological_processmRNA processing
B0035515molecular_functionoxidative RNA demethylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 300
ChainResidue
AHIS135
AASP137
AHIS197
ASIN301
AHOH414
AHOH634

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE SIN A 301
ChainResidue
AHIS135
AHIS197
AILE199
AARG208
AVAL210
AILE212
AMN300
AHOH414
AHOH455
AHOH634
AASN124
ATYR126
AILE132

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 300
ChainResidue
BHIS135
BASP137
BHIS197
BSIN301
BHOH417
BHOH632

site_idAC4
Number of Residues14
DetailsBINDING SITE FOR RESIDUE SIN B 301
ChainResidue
BASN124
BTYR126
BILE132
BHIS135
BHIS197
BILE199
BARG208
BVAL210
BILE212
BMN300
BHOH417
BHOH443
BHOH488
BHOH632

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"evidences":[{"source":"UniProtKB","id":"Q6P6C2","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"24561204","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4NPL","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"24561204","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

239492

PDB entries from 2025-07-30

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