4NMF
Crystal structure of proline utilization A (PutA) from Geobacter sulfurreducens PCA inactivated by N-propargylglycine and complexed with menadione bisulfite
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0003700 | molecular_function | DNA-binding transcription factor activity |
| A | 0003842 | molecular_function | 1-pyrroline-5-carboxylate dehydrogenase activity |
| A | 0004657 | molecular_function | proline dehydrogenase activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006355 | biological_process | regulation of DNA-templated transcription |
| A | 0006562 | biological_process | proline catabolic process |
| A | 0009898 | cellular_component | cytoplasmic side of plasma membrane |
| A | 0010133 | biological_process | proline catabolic process to glutamate |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0003700 | molecular_function | DNA-binding transcription factor activity |
| B | 0003842 | molecular_function | 1-pyrroline-5-carboxylate dehydrogenase activity |
| B | 0004657 | molecular_function | proline dehydrogenase activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006355 | biological_process | regulation of DNA-templated transcription |
| B | 0006562 | biological_process | proline catabolic process |
| B | 0009898 | cellular_component | cytoplasmic side of plasma membrane |
| B | 0010133 | biological_process | proline catabolic process to glutamate |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 30 |
| Details | BINDING SITE FOR RESIDUE P5F A 1101 |
| Chain | Residue |
| A | LYS203 |
| A | GLY307 |
| A | ALA308 |
| A | TYR309 |
| A | TRP310 |
| A | TRP327 |
| A | THR328 |
| A | ILE329 |
| A | LYS330 |
| A | SER333 |
| A | SER357 |
| A | ASP244 |
| A | HIS358 |
| A | ASN359 |
| A | GLN383 |
| A | LEU385 |
| A | TYR406 |
| A | GLU425 |
| A | GLU430 |
| A | PHE432 |
| A | 2L31102 |
| A | HOH1500 |
| A | MET245 |
| A | HOH1658 |
| A | VAL274 |
| A | GLN276 |
| A | TYR278 |
| A | ARG303 |
| A | VAL305 |
| A | LYS306 |
| site_id | AC2 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE 2L3 A 1102 |
| Chain | Residue |
| A | ASP145 |
| A | LYS203 |
| A | ALA308 |
| A | TYR309 |
| A | TYR406 |
| A | TYR418 |
| A | ARG421 |
| A | ARG422 |
| A | P5F1101 |
| A | HOH1633 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO A 1103 |
| Chain | Residue |
| A | TRP327 |
| A | GLU332 |
| A | ALA336 |
| A | ARG339 |
| A | ARG458 |
| A | HOH1322 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE EDO A 1104 |
| Chain | Residue |
| A | LYS316 |
| A | GLN319 |
| A | HOH1583 |
| B | ASN987 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO A 1105 |
| Chain | Residue |
| A | TYR248 |
| A | TRP322 |
| A | ASP485 |
| A | HOH1204 |
| A | HOH1473 |
| A | HOH1609 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO A 1106 |
| Chain | Residue |
| A | TYR616 |
| A | ARG619 |
| A | GLU620 |
| A | GLU953 |
| A | HOH1661 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE EDO A 1107 |
| Chain | Residue |
| A | ASP770 |
| A | ASP803 |
| A | ALA804 |
| A | LYS901 |
| site_id | AC8 |
| Number of Residues | 31 |
| Details | BINDING SITE FOR RESIDUE P5F B 1101 |
| Chain | Residue |
| B | LYS203 |
| B | ASP244 |
| B | MET245 |
| B | VAL274 |
| B | GLN276 |
| B | TYR278 |
| B | ARG303 |
| B | VAL305 |
| B | LYS306 |
| B | GLY307 |
| B | ALA308 |
| B | TRP310 |
| B | TRP327 |
| B | THR328 |
| B | ILE329 |
| B | LYS330 |
| B | SER333 |
| B | SER357 |
| B | HIS358 |
| B | ASN359 |
| B | GLN383 |
| B | LEU385 |
| B | TYR406 |
| B | GLU425 |
| B | GLU430 |
| B | SER431 |
| B | PHE432 |
| B | 2L31102 |
| B | 2LB1103 |
| B | HOH1566 |
| B | HOH1567 |
| site_id | AC9 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE 2L3 B 1102 |
| Chain | Residue |
| B | TYR309 |
| B | TYR406 |
| B | TYR418 |
| B | ARG421 |
| B | ARG422 |
| B | P5F1101 |
| B | ASP145 |
| B | LYS203 |
| B | ALA308 |
| site_id | BC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE 2LB B 1103 |
| Chain | Residue |
| B | LYS203 |
| B | TYR309 |
| B | LEU385 |
| B | TYR418 |
| B | ARG421 |
| B | P5F1101 |
| site_id | BC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE EDO B 1104 |
| Chain | Residue |
| B | TYR616 |
| B | ARG619 |
| B | GLU620 |
| B | HOH1632 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO B 1105 |
| Chain | Residue |
| B | TYR248 |
| B | TRP322 |
| B | ASP485 |
| B | HOH1215 |
| B | HOH1315 |
| B | HOH1327 |
| site_id | BC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE EDO B 1106 |
| Chain | Residue |
| A | ARG945 |
| B | GLU636 |
Functional Information from PROSITE/UniProt
| site_id | PS00070 |
| Number of Residues | 12 |
| Details | ALDEHYDE_DEHYDR_CYS Aldehyde dehydrogenases cysteine active site. FgFQGQKCSACS |
| Chain | Residue | Details |
| A | PHE786-SER797 |
