4NM9
Crystal structure of the resting state of proline utilization A (PutA) from Geobacter sulfurreducens PCA
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0003700 | molecular_function | DNA-binding transcription factor activity |
| A | 0003842 | molecular_function | 1-pyrroline-5-carboxylate dehydrogenase activity |
| A | 0004657 | molecular_function | proline dehydrogenase activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006355 | biological_process | regulation of DNA-templated transcription |
| A | 0006562 | biological_process | proline catabolic process |
| A | 0009898 | cellular_component | cytoplasmic side of plasma membrane |
| A | 0010133 | biological_process | proline catabolic process to glutamate |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0003700 | molecular_function | DNA-binding transcription factor activity |
| B | 0003842 | molecular_function | 1-pyrroline-5-carboxylate dehydrogenase activity |
| B | 0004657 | molecular_function | proline dehydrogenase activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006355 | biological_process | regulation of DNA-templated transcription |
| B | 0006562 | biological_process | proline catabolic process |
| B | 0009898 | cellular_component | cytoplasmic side of plasma membrane |
| B | 0010133 | biological_process | proline catabolic process to glutamate |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 29 |
| Details | BINDING SITE FOR RESIDUE FAD A 2001 |
| Chain | Residue |
| A | ASP244 |
| A | TYR309 |
| A | TRP310 |
| A | TRP327 |
| A | THR328 |
| A | ILE329 |
| A | LYS330 |
| A | SER333 |
| A | ALA356 |
| A | SER357 |
| A | HIS358 |
| A | MET245 |
| A | ASN359 |
| A | LEU385 |
| A | TYR406 |
| A | GLU425 |
| A | SER431 |
| A | PHE432 |
| A | HOH2173 |
| A | HOH2284 |
| A | HOH2579 |
| A | HOH2583 |
| A | GLN276 |
| A | TYR278 |
| A | ARG303 |
| A | VAL305 |
| A | LYS306 |
| A | GLY307 |
| A | ALA308 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO A 2002 |
| Chain | Residue |
| A | TYR248 |
| A | TRP322 |
| A | ASP485 |
| A | HOH2114 |
| A | HOH2188 |
| A | HOH2305 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE EDO A 2003 |
| Chain | Residue |
| A | GLN319 |
| A | ARG945 |
| A | HOH2678 |
| B | GLU636 |
| site_id | AC4 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE EDO A 2004 |
| Chain | Residue |
| A | GLU609 |
| A | PHE613 |
| A | ALA950 |
| A | LEU951 |
| A | VAL952 |
| A | GLN955 |
| A | PRO956 |
| A | PHE957 |
| A | ALA969 |
| A | HOH2190 |
| site_id | AC5 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE EDO A 2005 |
| Chain | Residue |
| A | ASN911 |
| A | THR913 |
| A | PHE915 |
| A | ALA916 |
| A | ARG937 |
| A | VAL938 |
| A | ARG961 |
| A | HOH2141 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO A 2006 |
| Chain | Residue |
| A | TRP327 |
| A | GLU332 |
| A | ALA336 |
| A | ARG339 |
| A | ARG458 |
| A | HOH2658 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE EDO A 2007 |
| Chain | Residue |
| A | GLU636 |
| B | GLN319 |
| B | ARG945 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO A 2008 |
| Chain | Residue |
| A | LYS755 |
| A | ILE756 |
| A | VAL965 |
| A | HOH2217 |
| B | LYS755 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO A 2009 |
| Chain | Residue |
| A | PRO269 |
| A | GLN299 |
| A | ILE300 |
| A | HIS352 |
| A | ARG379 |
| site_id | BC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO A 2010 |
| Chain | Residue |
| A | PHE478 |
| A | ARG619 |
| A | GLU620 |
| A | GLU953 |
| A | HOH2521 |
| A | HOH2639 |
| site_id | BC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE EDO A 2011 |
| Chain | Residue |
| A | MET483 |
| A | ASP601 |
| A | ALA605 |
| site_id | BC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE EDO A 2012 |
| Chain | Residue |
| A | HIS498 |
| A | LYS583 |
| A | ARG584 |
| A | LEU585 |
| A | PHE586 |
| A | GLU587 |
| B | HOH2568 |
| site_id | BC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE EDO A 2013 |
| Chain | Residue |
| A | GLY715 |
| A | ASP716 |
| site_id | BC5 |
| Number of Residues | 29 |
| Details | BINDING SITE FOR RESIDUE FAD B 2001 |
| Chain | Residue |
| B | ARG303 |
| B | VAL305 |
| B | LYS306 |
| B | GLY307 |
| B | ALA308 |
| B | TYR309 |
| B | TRP310 |
| B | TRP327 |
| B | THR328 |
| B | ILE329 |
| B | LYS330 |
| B | SER333 |
| B | ALA356 |
| B | SER357 |
| B | HIS358 |
| B | ASN359 |
| B | LEU385 |
| B | TYR406 |
| B | GLU425 |
| B | SER431 |
| B | PHE432 |
| B | HOH2272 |
| B | HOH2392 |
| B | HOH2477 |
| B | ASP244 |
| B | MET245 |
| B | VAL274 |
| B | GLN276 |
| B | TYR278 |
| site_id | BC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO B 2002 |
| Chain | Residue |
| B | ASP770 |
| B | ASP803 |
| B | ALA804 |
| B | LYS901 |
| B | HOH2177 |
| site_id | BC7 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO B 2003 |
| Chain | Residue |
| A | ASP770 |
| A | ASP803 |
| A | ALA804 |
| A | LYS901 |
| A | HOH2480 |
| site_id | BC8 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE EDO B 2004 |
| Chain | Residue |
| B | GLU609 |
| B | PHE613 |
| B | ALA950 |
| B | LEU951 |
| B | VAL952 |
| B | GLN955 |
| B | PHE957 |
| B | ALA969 |
| B | GLY970 |
| B | HOH2140 |
| site_id | BC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO B 2005 |
| Chain | Residue |
| B | TYR248 |
| B | TRP322 |
| B | ASP485 |
| B | HOH2236 |
| B | HOH2396 |
| B | HOH2409 |
| site_id | CC1 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE EDO B 2006 |
| Chain | Residue |
| B | ASN911 |
| B | THR913 |
| B | PHE915 |
| B | ALA916 |
| B | ARG937 |
| B | VAL938 |
| B | ARG961 |
| B | HOH2415 |
| B | HOH2511 |
| site_id | CC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO B 2007 |
| Chain | Residue |
| B | TRP327 |
| B | GLU332 |
| B | ALA336 |
| B | ARG339 |
| B | ARG458 |
| B | HOH2565 |
| site_id | CC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO B 2008 |
| Chain | Residue |
| A | LYS755 |
| B | LYS755 |
| B | ILE756 |
| B | VAL965 |
| B | HIS977 |
| B | HOH2134 |
| site_id | CC4 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE EDO B 2009 |
| Chain | Residue |
| B | PHE513 |
| B | LEU699 |
| B | PRO700 |
| B | GLU701 |
| B | GLY702 |
| B | VAL703 |
| B | PHE704 |
| B | HOH2150 |
| B | HOH2516 |
| site_id | CC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO B 2010 |
| Chain | Residue |
| B | PRO269 |
| B | GLN299 |
| B | ILE300 |
| B | HIS352 |
| B | ARG379 |
| site_id | CC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO B 2011 |
| Chain | Residue |
| B | TYR616 |
| B | ARG619 |
| B | GLU620 |
| B | GLU953 |
| B | HOH2540 |
| B | HOH2584 |
Functional Information from PROSITE/UniProt
| site_id | PS00070 |
| Number of Residues | 12 |
| Details | ALDEHYDE_DEHYDR_CYS Aldehyde dehydrogenases cysteine active site. FgFQGQKCSACS |
| Chain | Residue | Details |
| A | PHE786-SER797 |
