4NG3
Crystal structure of 5-carboxyvanillate decarboxylase from Sphingomonas paucimobilis complexed with 4-Hydroxy-3-methoxy-5-nitrobenzoic acid
Replaces: 4L5PFunctional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0016787 | molecular_function | hydrolase activity |
A | 0016829 | molecular_function | lyase activity |
A | 0016831 | molecular_function | carboxy-lyase activity |
A | 0019748 | biological_process | secondary metabolic process |
A | 0046872 | molecular_function | metal ion binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0016787 | molecular_function | hydrolase activity |
B | 0016829 | molecular_function | lyase activity |
B | 0016831 | molecular_function | carboxy-lyase activity |
B | 0019748 | biological_process | secondary metabolic process |
B | 0046872 | molecular_function | metal ion binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0016787 | molecular_function | hydrolase activity |
C | 0016829 | molecular_function | lyase activity |
C | 0016831 | molecular_function | carboxy-lyase activity |
C | 0019748 | biological_process | secondary metabolic process |
C | 0046872 | molecular_function | metal ion binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0016787 | molecular_function | hydrolase activity |
D | 0016829 | molecular_function | lyase activity |
D | 0016831 | molecular_function | carboxy-lyase activity |
D | 0019748 | biological_process | secondary metabolic process |
D | 0046872 | molecular_function | metal ion binding |
E | 0005737 | cellular_component | cytoplasm |
E | 0005829 | cellular_component | cytosol |
E | 0016787 | molecular_function | hydrolase activity |
E | 0016829 | molecular_function | lyase activity |
E | 0016831 | molecular_function | carboxy-lyase activity |
E | 0019748 | biological_process | secondary metabolic process |
E | 0046872 | molecular_function | metal ion binding |
F | 0005737 | cellular_component | cytoplasm |
F | 0005829 | cellular_component | cytosol |
F | 0016787 | molecular_function | hydrolase activity |
F | 0016829 | molecular_function | lyase activity |
F | 0016831 | molecular_function | carboxy-lyase activity |
F | 0019748 | biological_process | secondary metabolic process |
F | 0046872 | molecular_function | metal ion binding |
G | 0005737 | cellular_component | cytoplasm |
G | 0005829 | cellular_component | cytosol |
G | 0016787 | molecular_function | hydrolase activity |
G | 0016829 | molecular_function | lyase activity |
G | 0016831 | molecular_function | carboxy-lyase activity |
G | 0019748 | biological_process | secondary metabolic process |
G | 0046872 | molecular_function | metal ion binding |
H | 0005737 | cellular_component | cytoplasm |
H | 0005829 | cellular_component | cytosol |
H | 0016787 | molecular_function | hydrolase activity |
H | 0016829 | molecular_function | lyase activity |
H | 0016831 | molecular_function | carboxy-lyase activity |
H | 0019748 | biological_process | secondary metabolic process |
H | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MN A 401 |
Chain | Residue |
A | GLU7 |
A | HIS173 |
A | ASP296 |
A | 1DF402 |
A | HOH726 |
site_id | AC2 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE 1DF A 402 |
Chain | Residue |
A | ALA77 |
A | HIS173 |
A | SER192 |
A | HIS226 |
A | ASP296 |
A | TYR299 |
A | MN401 |
A | HOH512 |
A | HOH520 |
A | HOH533 |
A | HOH585 |
A | HOH650 |
H | ARG237 |
H | ASN244 |
A | GLU7 |
A | LEU34 |
A | ARG45 |
A | THR76 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 403 |
Chain | Residue |
A | TYR240 |
A | MET241 |
A | GLY243 |
A | ASN244 |
A | HOH615 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MN B 401 |
Chain | Residue |
B | GLU7 |
B | HIS173 |
B | ASP296 |
B | 1DF402 |
B | HOH740 |
site_id | AC5 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE 1DF B 402 |
Chain | Residue |
B | GLU7 |
B | LEU34 |
B | ARG45 |
B | THR76 |
B | ALA77 |
B | HIS173 |
B | SER192 |
B | HIS226 |
B | ASP296 |
B | TYR299 |
B | MN401 |
B | HOH516 |
B | HOH532 |
B | HOH558 |
B | HOH564 |
B | HOH566 |
G | ARG237 |
site_id | AC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PEG B 403 |
Chain | Residue |
B | TYR240 |
B | MET241 |
B | GLY243 |
B | ASN244 |
B | HOH609 |
B | HOH855 |
site_id | AC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MN C 401 |
Chain | Residue |
C | GLU7 |
C | HIS173 |
C | ASP296 |
C | 1DF402 |
C | HOH834 |
site_id | AC8 |
Number of Residues | 20 |
Details | BINDING SITE FOR RESIDUE 1DF C 402 |
Chain | Residue |
C | GLU7 |
C | LEU34 |
C | ARG45 |
C | THR76 |
C | ALA77 |
C | HIS173 |
C | SER192 |
C | ALA193 |
C | HIS226 |
C | ASP296 |
C | TYR299 |
C | MN401 |
C | HOH515 |
C | HOH531 |
C | HOH533 |
C | HOH538 |
C | HOH834 |
C | HOH843 |
F | ARG237 |
F | ASN244 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO C 403 |
Chain | Residue |
C | TYR240 |
C | MET241 |
C | GLY243 |
C | ASN244 |
C | HOH593 |
site_id | BC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MN D 401 |
Chain | Residue |
D | GLU7 |
D | HIS173 |
D | ASP296 |
D | 1DF402 |
D | HOH759 |
site_id | BC2 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE 1DF D 402 |
Chain | Residue |
D | HIS226 |
D | ASP296 |
D | TYR299 |
D | MN401 |
D | HOH521 |
D | HOH545 |
D | HOH557 |
D | HOH559 |
D | HOH625 |
E | ARG237 |
E | ASN244 |
D | GLU7 |
D | LEU34 |
D | ARG45 |
D | THR76 |
D | ALA77 |
D | HIS173 |
D | SER192 |
D | ALA193 |
site_id | BC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO D 403 |
Chain | Residue |
D | TYR240 |
D | MET241 |
D | GLY243 |
D | ASN244 |
D | HOH587 |
site_id | BC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MN E 401 |
Chain | Residue |
E | GLU7 |
E | HIS173 |
E | ASP296 |
E | 1DF402 |
E | HOH837 |
site_id | BC5 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE 1DF E 402 |
Chain | Residue |
D | ARG237 |
D | ASN244 |
E | GLU7 |
E | LEU34 |
E | ARG45 |
E | THR76 |
E | ALA77 |
E | HIS173 |
E | SER192 |
E | HIS226 |
E | ASP296 |
E | TYR299 |
E | MN401 |
E | HOH504 |
E | HOH510 |
E | HOH513 |
E | HOH589 |
E | HOH684 |
site_id | BC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PEG E 403 |
Chain | Residue |
E | TYR240 |
E | MET241 |
E | GLY243 |
E | ASN244 |
E | HOH682 |
site_id | BC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PEG E 404 |
Chain | Residue |
E | ARG45 |
E | PRO46 |
E | ALA47 |
E | MET48 |
E | ARG51 |
G | ASP41 |
site_id | BC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO E 405 |
Chain | Residue |
E | ASP152 |
E | HIS157 |
E | SER211 |
E | LEU213 |
E | ARG216 |
E | HOH678 |
E | HOH741 |
site_id | BC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO E 406 |
Chain | Residue |
E | PHE308 |
E | THR311 |
E | HOH543 |
E | HOH780 |
F | ARG263 |
site_id | CC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MN F 401 |
Chain | Residue |
F | GLU7 |
F | HIS173 |
F | ASP296 |
F | 1DF402 |
F | HOH830 |
site_id | CC2 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE 1DF F 402 |
Chain | Residue |
C | ARG237 |
C | ASN244 |
F | GLU7 |
F | LEU34 |
F | ARG45 |
F | THR76 |
F | ALA77 |
F | HIS173 |
F | SER192 |
F | HIS226 |
F | ASP296 |
F | TYR299 |
F | MN401 |
F | HOH502 |
F | HOH513 |
F | HOH527 |
F | HOH568 |
F | HOH632 |
F | HOH830 |
site_id | CC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PEG F 403 |
Chain | Residue |
F | TYR240 |
F | MET241 |
F | GLY243 |
F | ASN244 |
F | HOH631 |
site_id | CC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MN G 401 |
Chain | Residue |
G | GLU7 |
G | HIS173 |
G | ASP296 |
G | 1DF402 |
G | HOH834 |
site_id | CC5 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE 1DF G 402 |
Chain | Residue |
B | ARG237 |
G | GLU7 |
G | LEU34 |
G | ARG45 |
G | THR76 |
G | ALA77 |
G | HIS173 |
G | SER192 |
G | HIS226 |
G | ASP296 |
G | TYR299 |
G | MN401 |
G | HOH509 |
G | HOH510 |
G | HOH531 |
G | HOH533 |
G | HOH600 |
G | HOH834 |
site_id | CC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO G 403 |
Chain | Residue |
G | TYR240 |
G | MET241 |
G | GLY243 |
G | ASN244 |
G | HOH586 |
site_id | CC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MN H 401 |
Chain | Residue |
H | GLU7 |
H | HIS173 |
H | ASP296 |
H | 1DF402 |
H | HOH821 |
site_id | CC8 |
Number of Residues | 20 |
Details | BINDING SITE FOR RESIDUE 1DF H 402 |
Chain | Residue |
A | ARG237 |
A | ASN244 |
H | GLU7 |
H | LEU34 |
H | ARG45 |
H | THR76 |
H | ALA77 |
H | HIS173 |
H | SER192 |
H | ALA193 |
H | HIS226 |
H | ASP296 |
H | TYR299 |
H | MN401 |
H | HOH509 |
H | HOH524 |
H | HOH528 |
H | HOH556 |
H | HOH676 |
H | HOH821 |
site_id | CC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PEG H 403 |
Chain | Residue |
H | TYR240 |
H | MET241 |
H | GLY243 |
H | ASN244 |
H | HOH613 |
site_id | DC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO H 404 |
Chain | Residue |
H | HIS242 |
H | LEU254 |
H | LYS255 |
H | LEU256 |
H | HOH571 |
H | HOH578 |
site_id | DC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO H 405 |
Chain | Residue |
H | HIS276 |
H | PHE308 |
H | THR311 |
H | HOH616 |
H | HOH683 |