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4NFK

Crystal structure of human FPPS in complex with nickel, JDS05120, and sulfate

Functional Information from GO Data
ChainGOidnamespacecontents
F0004659molecular_functionprenyltransferase activity
F0008299biological_processisoprenoid biosynthetic process
F0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE NI F 401
ChainResidue
FASP103
FASP107
FNI403
FJD5404
FHOH519
FHOH520
FHOH521

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NI F 402
ChainResidue
FHOH522
FHOH523
FHOH524
FASP243
FJD5404

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NI F 403
ChainResidue
FASP103
FASP107
FNI401
FJD5404
FHOH525
FHOH526

site_idAC4
Number of Residues30
DetailsBINDING SITE FOR RESIDUE JD5 F 404
ChainResidue
FPHE98
FPHE99
FALA102
FASP103
FMET106
FASP107
FARG112
FASN130
FASN133
FTHR167
FGLN171
FLYS200
FTHR201
FGLN240
FASP243
FLYS257
FNI401
FNI402
FNI403
FHOH508
FHOH509
FHOH519
FHOH520
FHOH522
FHOH523
FHOH524
FHOH525
FHOH526
FHOH587
FHOH620

site_idAC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 F 405
ChainResidue
FGLY56
FLYS57
FARG60
FARG113
FHOH503
FHOH528
FHOH537
FHOH580
FHOH586
FHOH622

Functional Information from PROSITE/UniProt
site_idPS00444
Number of Residues13
DetailsPOLYPRENYL_SYNTHASE_2 Polyprenyl synthases signature 2. MGefFQIqDDYlD
ChainResidueDetails
FMET235-ASP247

site_idPS00723
Number of Residues15
DetailsPOLYPRENYL_SYNTHASE_1 Polyprenyl synthases signature 1. LVaDDim..DssltRRG
ChainResidueDetails
FLEU100-GLY114

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"16684881","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1ZW5","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues5
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsSite: {"description":"Important for determining product chain length","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine; alternate","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246905

PDB entries from 2025-12-31

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