4NBQ
Structure of the polynucleotide phosphorylase (CBU_0852) from Coxiella burnetii
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0003676 | molecular_function | nucleic acid binding |
| A | 0003723 | molecular_function | RNA binding |
| A | 0004654 | molecular_function | polyribonucleotide nucleotidyltransferase activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006396 | biological_process | RNA processing |
| A | 0006401 | biological_process | RNA catabolic process |
| A | 0006402 | biological_process | mRNA catabolic process |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016779 | molecular_function | nucleotidyltransferase activity |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0003676 | molecular_function | nucleic acid binding |
| B | 0003723 | molecular_function | RNA binding |
| B | 0004654 | molecular_function | polyribonucleotide nucleotidyltransferase activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006396 | biological_process | RNA processing |
| B | 0006401 | biological_process | RNA catabolic process |
| B | 0006402 | biological_process | mRNA catabolic process |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016779 | molecular_function | nucleotidyltransferase activity |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0000175 | molecular_function | 3'-5'-RNA exonuclease activity |
| C | 0000287 | molecular_function | magnesium ion binding |
| C | 0003676 | molecular_function | nucleic acid binding |
| C | 0003723 | molecular_function | RNA binding |
| C | 0004654 | molecular_function | polyribonucleotide nucleotidyltransferase activity |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005829 | cellular_component | cytosol |
| C | 0006396 | biological_process | RNA processing |
| C | 0006401 | biological_process | RNA catabolic process |
| C | 0006402 | biological_process | mRNA catabolic process |
| C | 0016740 | molecular_function | transferase activity |
| C | 0016779 | molecular_function | nucleotidyltransferase activity |
| C | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 A 701 |
| Chain | Residue |
| A | ARG402 |
| A | SER437 |
| A | GLY439 |
| A | SER440 |
| A | SER441 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 A 702 |
| Chain | Residue |
| A | ARG548 |
| A | SER549 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 A 703 |
| Chain | Residue |
| B | THR236 |
| A | THR518 |
| A | GLU520 |
| site_id | AC4 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE SO4 A 704 |
| Chain | Residue |
| A | ARG33 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 A 705 |
| Chain | Residue |
| A | PRO103 |
| A | LYS104 |
| A | ASN145 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 A 706 |
| Chain | Residue |
| A | TYR257 |
| A | ILE269 |
| A | ARG273 |
| A | GLU304 |
| site_id | AC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE SO4 A 707 |
| Chain | Residue |
| A | ASP120 |
| A | SER121 |
| C | ARG339 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 B 701 |
| Chain | Residue |
| A | ARG339 |
| B | ASP120 |
| B | SER121 |
| B | LYS122 |
| B | SO4702 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 B 702 |
| Chain | Residue |
| B | LYS122 |
| B | ARG548 |
| B | SER549 |
| B | GLN550 |
| B | SO4701 |
| site_id | BC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 B 703 |
| Chain | Residue |
| B | HIS406 |
| B | SER437 |
| B | GLY439 |
| B | SER440 |
| B | SER441 |
| site_id | BC2 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE SO4 B 704 |
| Chain | Residue |
| B | ARG33 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 C 701 |
| Chain | Residue |
| C | PHE385 |
| C | HIS406 |
| C | SER437 |
| C | GLY439 |
| C | SER440 |
| C | SER441 |
| site_id | BC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE SO4 C 702 |
| Chain | Residue |
| C | ARG548 |
| C | SER549 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01595","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
