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4NAK

Arabidopsis thaliana IspD in complex with pentabromo-pseudilin

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0008299biological_processisoprenoid biosynthetic process
A0050518molecular_function2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
A0070567molecular_functioncytidylyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PBQ A 401
ChainResidue
AALA203
AGLN238
AVAL239
ALEU245
ASER264
AILE265
AVAL266
ACD403

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE DTT A 402
ChainResidue
AASP196
AALA199
AVAL200
ATYR274
AK409
AK409
AK409
ALYS195

site_idAC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CD A 403
ChainResidue
AGLN238
APBQ401

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CD A 404
ChainResidue
AGLU167
AGLU167

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CD A 405
ChainResidue
AASP261
AHOH517
AHOH526
AHOH560

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CD A 406
ChainResidue
AGLU138
AGLU141
AASP169

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CD A 407
ChainResidue
AGLU121
AGLU191
AHIS271
AHOH507
AHOH539

site_idAC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE K A 408
ChainResidue
AASP290

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE K A 409
ChainResidue
ADTT402
ADTT402
ADTT402

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K A 410
ChainResidue
AARG182
APRO183
ALEU184
AASN282
AILE283

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K A 411
ChainResidue
AILE108
AALA109
ASER112
ASER180
APRO183

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K A 412
ChainResidue
ASER117
AMET119
AVAL122
AASP145
AVAL146

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE K A 413
ChainResidue
AASN186
AASP189
AHOH505
AHOH508

Functional Information from PROSITE/UniProt
site_idPS01295
Number of Residues8
DetailsISPD 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. VCIHDSAR
ChainResidueDetails
AVAL175-ARG182

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Transition state stabilizer => ECO:0000250
ChainResidueDetails
AARG91
ALYS98

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Positions MEP for the nucleophilic attack => ECO:0000250
ChainResidueDetails
AARG228
ALYS284

218853

PDB entries from 2024-04-24

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