4N2A

Crystal structure of Protein Arginine Deiminase 2 (5 mM Ca2+)

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000791	cellular_component	euchromatin
A	0004668	molecular_function	protein-arginine deiminase activity
A	0005509	molecular_function	calcium ion binding
A	0005576	cellular_component	extracellular region
A	0005634	cellular_component	nucleus
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0006338	biological_process	chromatin remodeling
A	0016787	molecular_function	hydrolase activity
A	0021762	biological_process	substantia nigra development
A	0030331	molecular_function	nuclear estrogen receptor binding
A	0030520	biological_process	estrogen receptor signaling pathway
A	0035578	cellular_component	azurophil granule lumen
A	0042803	molecular_function	protein homodimerization activity
A	0045815	biological_process	transcription initiation-coupled chromatin remodeling
A	0046872	molecular_function	metal ion binding
A	0070062	cellular_component	extracellular exosome
A	0070100	biological_process	negative regulation of chemokine-mediated signaling pathway
A	0140794	molecular_function	histone arginine deiminase activity
A	0140798	molecular_function	histone H3R26 arginine deiminase activity
A	1901624	biological_process	negative regulation of lymphocyte chemotaxis
A	1990830	biological_process	cellular response to leukemia inhibitory factor

Functional Information from PDB Data

site_id	AC1
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MPD A 701

Chain	Residue
A	TYR216
A	GLU218
A	HIS237
A	VAL239
A	LYS240
A	PHE250
A	HOH1235

---

site_id	AC2
Number of Residues	7
Details	BINDING SITE FOR RESIDUE MPD A 702

Chain	Residue
A	PRO436
A	GLU461
A	LEU462
A	TRP550
A	HOH1300
A	SER433
A	SER434

---

site_id	AC3
Number of Residues	1
Details	BINDING SITE FOR RESIDUE MPD A 703

Chain	Residue
A	GLU199

---

site_id	AC4
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA A 704

Chain	Residue
A	ASP166
A	ASP169
A	LYS171
A	HOH835
A	HOH878
A	HOH894
A	HOH917

---

site_id	AC5
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA A 705

Chain	Residue
A	ASN154
A	ASP156
A	GLU158
A	ASP166
A	ASP177
A	ASP180
A	CA706

---

site_id	AC6
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA A 706

Chain	Residue
A	ASP156
A	GLU158
A	ASP180
A	ASP389
A	CA705
A	HOH872
A	HOH888

---

site_id	AC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ACT A 707

Chain	Residue
A	GLN350
A	ASN590
A	ILE592
A	THR649

---

site_id	AC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA A 708

Chain	Residue
A	ASP123
A	ASP125
A	ASP127
A	VAL129
A	GLU131
A	HOH890

---

site_id	AC9
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA A 709

Chain	Residue
A	GLN350
A	GLU354
A	PHE408
A	LEU411
A	GLU412
A	HOH814
A	HOH861

---

site_id	BC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MPD A 710

Chain	Residue
A	ILE526
A	LYS530
A	ASN534
A	PHE584
A	HOH1179

---

site_id	BC2
Number of Residues	1
Details	BINDING SITE FOR RESIDUE ACT A 711

Chain	Residue
A	ARG448

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	Active site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"25621824","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	1
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25621824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4N20","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N22","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N24","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N25","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N26","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N28","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2B","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2F","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2M","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2N","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	1
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25621824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4N20","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N22","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N24","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N26","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N28","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2B","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2D","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2E","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2F","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2K","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2M","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2N","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	3
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25621824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4N20","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N22","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N24","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N25","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N26","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N28","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2B","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2D","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2E","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2F","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2K","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2M","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2N","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25621824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4N25","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N26","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N28","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2B","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2E","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2N","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25621824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4N25","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N26","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N28","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2B","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2E","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2N","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	1
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25621824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4N26","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N28","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2B","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2E","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2N","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	3
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25621824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4N25","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N26","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2B","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2E","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2I","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2L","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	1
Details	Binding site: {"evidences":[{"source":"PDB","id":"4N25","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N26","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N28","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2B","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2E","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2N","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI10
Number of Residues	1
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25621824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4N28","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2B","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2I","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI11
Number of Residues	3
Details	Binding site: {"evidences":[{"source":"PubMed","id":"25621824","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4N28","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2B","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2E","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4N2I","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---