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4N1Z

Crystal Structure of Human Farnesyl Diphosphate Synthase in Complex with BPH-1222

Functional Information from GO Data
ChainGOidnamespacecontents
F0004659molecular_functionprenyltransferase activity
F0008299biological_processisoprenoid biosynthetic process
F0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO4 F 401
ChainResidue
FARG60
FGLN96
FARG112
FPHE239
FLYS257
FPO4405
FN1Z406
FHOH511
FHOH527

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MG F 402
ChainResidue
FASP243
FN1Z406

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG F 403
ChainResidue
FASP103
FASP107
FN1Z406

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG F 404
ChainResidue
FASP103
FASP107
FN1Z406

site_idAC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PO4 F 405
ChainResidue
FGLY56
FLYS57
FARG60
FGLN96
FARG113
FPO4401
FHOH508
FHOH511
FHOH544
FHOH549

site_idAC6
Number of Residues17
DetailsBINDING SITE FOR RESIDUE N1Z F 406
ChainResidue
FPHE99
FASP103
FASP107
FARG112
FASN130
FGLU168
FGLN171
FLYS200
FTHR201
FASP243
FLYS257
FPO4401
FMG402
FMG403
FMG404
FHOH505
FHOH533

Functional Information from PROSITE/UniProt
site_idPS00444
Number of Residues13
DetailsPOLYPRENYL_SYNTHASE_2 Polyprenyl synthases signature 2. MGefFQIqDDYlD
ChainResidueDetails
FMET235-ASP247

site_idPS00723
Number of Residues15
DetailsPOLYPRENYL_SYNTHASE_1 Polyprenyl synthases signature 1. LVaDDim..DssltRRG
ChainResidueDetails
FLEU100-GLY114

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"16684881","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1ZW5","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues5
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsSite: {"description":"Important for determining product chain length","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine; alternate","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

238895

PDB entries from 2025-07-16

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