4MWD
Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor 1-{3-[(3,5-dichlorobenzyl)amino]propyl}-3-thiophen-3-ylurea (Chem 1433) and ATP analog AMPPCP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
| A | 0004825 | molecular_function | methionine-tRNA ligase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0006418 | biological_process | tRNA aminoacylation for protein translation |
| A | 0006431 | biological_process | methionyl-tRNA aminoacylation |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0004812 | molecular_function | aminoacyl-tRNA ligase activity |
| B | 0004825 | molecular_function | methionine-tRNA ligase activity |
| B | 0005524 | molecular_function | ATP binding |
| B | 0006418 | biological_process | tRNA aminoacylation for protein translation |
| B | 0006431 | biological_process | methionyl-tRNA aminoacylation |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE GOL A 901 |
| Chain | Residue |
| A | TRP345 |
| A | GLU349 |
| A | PRO464 |
| A | GLY465 |
| A | ASN466 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE GOL A 902 |
| Chain | Residue |
| A | ARG583 |
| A | ARG601 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL A 903 |
| Chain | Residue |
| A | ASN458 |
| A | TRP459 |
| A | ALA460 |
| A | HOH1118 |
| A | HIS289 |
| A | LYS338 |
| site_id | AC4 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE GOL A 904 |
| Chain | Residue |
| A | ARG719 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE DMS A 905 |
| Chain | Residue |
| A | VAL436 |
| A | HOH1225 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE DMS A 906 |
| Chain | Residue |
| A | PHE370 |
| A | LYS521 |
| A | TYR526 |
| A | HOH1056 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 A 907 |
| Chain | Residue |
| A | ARG271 |
| A | VAL275 |
| A | SER714 |
| A | PRO718 |
| site_id | AC8 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE MET A 908 |
| Chain | Residue |
| A | ILE248 |
| A | TYR250 |
| A | ASP287 |
| A | TRP474 |
| A | ALA477 |
| A | TYR481 |
| A | ILE519 |
| A | HIS523 |
| A | HOH1100 |
| A | HOH1116 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL B 801 |
| Chain | Residue |
| B | GLU343 |
| B | LEU482 |
| B | ARG486 |
| B | HOH1140 |
| site_id | BC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE GOL B 802 |
| Chain | Residue |
| B | ARG583 |
| B | ARG601 |
| B | HOH1043 |
| site_id | BC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL B 803 |
| Chain | Residue |
| B | TYR472 |
| B | PHE522 |
| B | 43E808 |
| B | HOH1089 |
| B | HOH1160 |
| B | HOH1161 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL B 804 |
| Chain | Residue |
| B | GLU239 |
| B | TYR359 |
| B | PHE370 |
| B | ASN404 |
| B | MET406 |
| B | HOH928 |
| site_id | BC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE GOL B 805 |
| Chain | Residue |
| B | HIS289 |
| B | THR333 |
| B | LYS338 |
| B | ASN458 |
| B | TRP459 |
| B | ALA460 |
| site_id | BC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE DMS B 806 |
| Chain | Residue |
| B | GLU320 |
| B | TYR324 |
| B | ILE326 |
| B | HOH1002 |
| site_id | BC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 B 807 |
| Chain | Residue |
| B | ARG271 |
| B | VAL275 |
| B | SER714 |
| B | PRO718 |
| B | HOH1139 |
| site_id | BC7 |
| Number of Residues | 16 |
| Details | BINDING SITE FOR RESIDUE 43E B 808 |
| Chain | Residue |
| B | ILE248 |
| B | TYR250 |
| B | ASP287 |
| B | HIS289 |
| B | GLY290 |
| B | TYR472 |
| B | VAL473 |
| B | TRP474 |
| B | ASP476 |
| B | ALA477 |
| B | TYR481 |
| B | HIS523 |
| B | GOL803 |
| B | ACP809 |
| B | HOH960 |
| B | HOH965 |
| site_id | BC8 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE ACP B 809 |
| Chain | Residue |
| B | HOH1154 |
| B | HOH1163 |
| B | TYR249 |
| B | TYR250 |
| B | GLY258 |
| B | HIS259 |
| B | SER262 |
| B | GLY516 |
| B | ASP518 |
| B | HIS545 |
| B | GLY546 |
| B | TRP547 |
| B | TRP548 |
| B | 43E808 |
| B | HOH925 |
| B | HOH1064 |
| B | HOH1123 |
