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4MUT

Crystal structure of vancomycin resistance D,D-dipeptidase/D,D-pentapeptidase VanXYc D59S mutant in complex with D-Alanine

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004180molecular_functioncarboxypeptidase activity
A0005737cellular_componentcytoplasm
A0006508biological_processproteolysis
A0008233molecular_functionpeptidase activity
A0016787molecular_functionhydrolase activity
A0046677biological_processresponse to antibiotic
A0046872molecular_functionmetal ion binding
A0160237molecular_functionD-Ala-D-Ala dipeptidase activity
B0003824molecular_functioncatalytic activity
B0004180molecular_functioncarboxypeptidase activity
B0005737cellular_componentcytoplasm
B0006508biological_processproteolysis
B0008233molecular_functionpeptidase activity
B0016787molecular_functionhydrolase activity
B0046677biological_processresponse to antibiotic
B0046872molecular_functionmetal ion binding
B0160237molecular_functionD-Ala-D-Ala dipeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 201
ChainResidue
AHIS95
AASP102
AHIS156
ADAL202
AHOH468
AHOH469

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE DAL A 202
ChainResidue
ASER93
AHIS95
AGLU153
AHIS156
AZN201
AHOH406
AHOH407
AHOH408
AHOH468
AHOH469
AGLN67
APHE86
AALA88

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 203
ChainResidue
AHIS21
ALEU22
BARG69

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PE3 A 204
ChainResidue
AASN2
ALEU6
AHIS179
BPHE189

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN B 201
ChainResidue
BHIS95
BASP102
BHIS156
BDAL202
BHOH443
BHOH444

site_idAC6
Number of Residues13
DetailsBINDING SITE FOR RESIDUE DAL B 202
ChainResidue
BARG62
BGLN67
BPHE86
BALA88
BSER93
BHIS95
BTYR140
BGLU153
BZN201
BHOH386
BHOH443
BHOH444
BHOH445

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 203
ChainResidue
AARG119
AHOH335
BLYS65
BARG68
BARG69
BHOH366

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"catalytic acid/base residue","evidences":[{"source":"PubMed","id":"24711382","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PDB","id":"4OAK","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"24711382","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4OAK","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PDB","id":"4MUR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4MUS","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246333

PDB entries from 2025-12-17

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