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4ME4

Crystal structure of a HD-GYP domain (a cyclic-di-GMP phosphodiesterase) containing a tri-nuclear metal centre

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0016787molecular_functionhydrolase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FE A 401
ChainResidue
AASP222
AHIS250
AHIS276
AHIS277
AFE402
ASIN404
AHOH501

site_idAC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE FE A 402
ChainResidue
ALYS225
AFE401
AFE403
ASIN404
ASIN405
AIMD407
AHOH501
AHOH502
AGLU185
AASP222

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FE A 403
ChainResidue
AGLU185
AHIS189
AASP305
AFE402
ASIN405
AIMD407
AHOH502
AHOH513

site_idAC4
Number of Residues15
DetailsBINDING SITE FOR RESIDUE SIN A 404
ChainResidue
AGLU185
AASP222
ALYS225
ALYS238
ATRP244
AMET247
AHIS250
AHIS277
ATYR285
AFE401
AFE402
ASIN405
AHOH501
AHOH510
AHOH562

site_idAC5
Number of Residues16
DetailsBINDING SITE FOR RESIDUE SIN A 405
ChainResidue
AGLU185
AHIS189
AGLY237
ALYS238
AASP305
AALA309
AFE402
AFE403
ASIN404
AHOH502
AHOH503
AHOH510
AHOH513
AHOH546
AHOH554
AHOH562

site_idAC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SIN A 406
ChainResidue
AGLU275
AGLU278
ATRP280
AILE294
AGLY298
AARG299
ASER302
AHIS336
APHE337
AASP338

site_idAC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE IMD A 407
ChainResidue
AGLU185
AHIS189
AILE190
AHIS221
AASP222
AASP305
AFE402
AFE403
AHOH502
AHOH506

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FE B 401
ChainResidue
BASP222
BHIS250
BHIS276
BHIS277
BFE402
BSIN405
BHOH501

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FE B 402
ChainResidue
BGLU185
BASP222
BLYS225
BFE401
B5GP404
BSIN405
BIMD407
BHOH501
BHOH502

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FE B 403
ChainResidue
BGLU185
BHIS189
BHIS221
BASP305
B5GP404
BIMD407
BHOH502

site_idBC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE 5GP B 404
ChainResidue
BGLU185
BHIS189
BHIS277
BASP305
BALA309
BARG314
BFE402
BFE403
BSIN405
BIMD407
BHOH504
BHOH509

site_idBC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SIN B 405
ChainResidue
BASP222
BLYS225
BHIS250
BHIS277
BTYR285
BFE401
BFE402
B5GP404
BHOH501
BHOH506

site_idBC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SIN B 406
ChainResidue
BGLU275
BGLU278
BILE294
BGLY298
BARG299
BSER302
BILE303
BHIS336
BPHE337
BASP338

site_idBC5
Number of Residues11
DetailsBINDING SITE FOR RESIDUE IMD B 407
ChainResidue
BGLU185
BHIS189
BILE190
BHIS221
BASP222
BASP305
BFE402
BFE403
B5GP404
BHOH502
BHOH507

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PDB entries from 2024-07-24

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