4MD1
Orange species of bacteriorhodopsin from Halobacterium salinarum
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005216 | molecular_function | monoatomic ion channel activity |
A | 0005886 | cellular_component | plasma membrane |
A | 0006811 | biological_process | monoatomic ion transport |
A | 0007602 | biological_process | phototransduction |
A | 0009881 | molecular_function | photoreceptor activity |
A | 0015454 | molecular_function | light-driven active monoatomic ion transmembrane transporter activity |
A | 0016020 | cellular_component | membrane |
A | 1902600 | biological_process | proton transmembrane transport |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE L2P A 1001 |
Chain | Residue |
A | SER132 |
A | ALA139 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SQL A 1002 |
Chain | Residue |
A | TYR26 |
A | VAL213 |
A | GLY218 |
A | ARG225 |
site_id | AC3 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE L2P A 1003 |
Chain | Residue |
A | ILE52 |
A | GLY116 |
site_id | AC4 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE L2P A 1004 |
Chain | Residue |
A | TRP80 |
site_id | AC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE L2P A 1005 |
Chain | Residue |
A | TYR64 |
A | LEU123 |
site_id | AC6 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE L2P A 1006 |
Chain | Residue |
A | TYR131 |
site_id | AC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE L2P A 1009 |
Chain | Residue |
A | VAL188 |
A | ILE191 |
site_id | AC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE L2P A 1010 |
Chain | Residue |
A | LEU87 |
A | PRO91 |
site_id | AC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE L2P A 1011 |
Chain | Residue |
A | MET145 |
A | VAL179 |
A | SER183 |
site_id | BC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE L2P A 1012 |
Chain | Residue |
A | TYR147 |
A | TYR150 |
A | L2P1019 |
site_id | BC2 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE L2P A 1014 |
Chain | Residue |
A | VAL173 |
site_id | BC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE L2P A 1017 |
Chain | Residue |
A | TRP10 |
A | ILE11 |
A | LEU15 |
site_id | BC4 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE L2P A 1018 |
Chain | Residue |
A | ILE198 |
site_id | BC5 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE L2P A 1019 |
Chain | Residue |
A | THR24 |
A | LEU25 |
A | LEU28 |
A | LYS40 |
A | ALA44 |
A | THR47 |
A | LEU48 |
A | ALA51 |
A | PHE54 |
A | ALA110 |
A | ALA114 |
A | TYR147 |
A | L2P1012 |
A | HOH1129 |
site_id | BC6 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE RET A 1020 |
Chain | Residue |
A | TRP86 |
A | THR90 |
A | MET118 |
A | SER141 |
A | THR142 |
A | TRP182 |
A | TYR185 |
A | TRP189 |
A | ASP212 |
A | LYS216 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 41 |
Details | TOPO_DOM: Extracellular => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W |
Chain | Residue | Details |
A | GLN1-GLU9 | |
A | GLY63-TYR79 | |
A | THR128-ARG134 | |
A | GLY192-ILE203 |
site_id | SWS_FT_FI2 |
Number of Residues | 19 |
Details | TRANSMEM: Helical; Name=Helix A => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W |
Chain | Residue | Details |
A | TRP10-VAL29 |
site_id | SWS_FT_FI3 |
Number of Residues | 40 |
Details | TOPO_DOM: Cytoplasmic => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W |
Chain | Residue | Details |
A | LYS30-TYR43 | |
A | LEU97-THR107 | |
A | GLY155-LYS172 |
site_id | SWS_FT_FI4 |
Number of Residues | 18 |
Details | TRANSMEM: Helical; Name=Helix B => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W |
Chain | Residue | Details |
A | ALA44-LEU62 |
site_id | SWS_FT_FI5 |
Number of Residues | 16 |
Details | TRANSMEM: Helical; Name=Helix C => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W |
Chain | Residue | Details |
A | TRP80-ASP96 |
site_id | SWS_FT_FI6 |
Number of Residues | 19 |
Details | TRANSMEM: Helical; Name=Helix D => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W |
Chain | Residue | Details |
A | ILE108-LEU127 |
site_id | SWS_FT_FI7 |
Number of Residues | 19 |
Details | TRANSMEM: Helical; Name=Helix E => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W |
Chain | Residue | Details |
A | PHE135-PHE154 |
site_id | SWS_FT_FI8 |
Number of Residues | 18 |
Details | TRANSMEM: Helical; Name=Helix F => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W |
Chain | Residue | Details |
A | VAL173-ILE191 |
site_id | SWS_FT_FI9 |
Number of Residues | 19 |
Details | TRANSMEM: Helical; Name=Helix G => ECO:0000269|PubMed:10452895, ECO:0000269|PubMed:28008064, ECO:0007744|PDB:1C3W |
Chain | Residue | Details |
A | GLU204-LEU223 |
site_id | SWS_FT_FI10 |
Number of Residues | 1 |
Details | SITE: Primary proton acceptor => ECO:0000305|PubMed:10903866, ECO:0000305|PubMed:10949309, ECO:0000305|PubMed:28008064 |
Chain | Residue | Details |
A | ASP85 |
site_id | SWS_FT_FI11 |
Number of Residues | 1 |
Details | MOD_RES: Pyrrolidone carboxylic acid => ECO:0000269|PubMed:9541408 |
Chain | Residue | Details |
A | GLN1 |
Chain | Residue | Details |
A | LYS216 |