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4MCC

HinTrmD in complex with N-[4-(AMINOMETHYL)BENZYL]-4-OXO-3,4-DIHYDROTHIENO[2,3-D]PYRIMIDINE-5-CARBOXAMIDE

Functional Information from GO Data
ChainGOidnamespacecontents
A0002939biological_processtRNA N1-guanine methylation
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0016740molecular_functiontransferase activity
A0032259biological_processmethylation
A0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
B0002939biological_processtRNA N1-guanine methylation
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006400biological_processtRNA modification
B0008033biological_processtRNA processing
B0008168molecular_functionmethyltransferase activity
B0016740molecular_functiontransferase activity
B0032259biological_processmethylation
B0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 21X A 301
ChainResidue
ALEU87
AGLY140
AGLY141
APRO144
AHOH572
BASP177
ASER88
ATYR115
AGLU116
ASER132
AILE133
AGLY134
ATYR136
ALEU138

site_idAC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE 21X B 301
ChainResidue
BLEU87
BSER88
BPRO89
BGLU116
BSER132
BILE133
BGLY134
BTYR136
BLEU138
BGLY140
BGLY141
BPRO144

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255
ChainResidueDetails
AASP169
BASP169

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING:
ChainResidueDetails
ATYR86
AGLY113
AILE133
BTYR86
BGLY113
BILE133

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 332
ChainResidueDetails
APRO89increase nucleophilicity, steric role
AGLU116electrostatic stabiliser, hydrogen bond acceptor
AARG154activator, electrostatic stabiliser, hydrogen bond donor

site_idMCSA2
Number of Residues3
DetailsM-CSA 332
ChainResidueDetails
BPRO89increase nucleophilicity, steric role
BGLU116electrostatic stabiliser, hydrogen bond acceptor
BARG154activator, electrostatic stabiliser, hydrogen bond donor

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PDB entries from 2025-06-11

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