4MBX
Structure of unliganded B-Lymphotropic Polyomavirus VP1
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005198 | molecular_function | structural molecule activity |
| A | 0019028 | cellular_component | viral capsid |
| B | 0005198 | molecular_function | structural molecule activity |
| B | 0019028 | cellular_component | viral capsid |
| C | 0005198 | molecular_function | structural molecule activity |
| C | 0019028 | cellular_component | viral capsid |
| D | 0005198 | molecular_function | structural molecule activity |
| D | 0019028 | cellular_component | viral capsid |
| E | 0005198 | molecular_function | structural molecule activity |
| E | 0019028 | cellular_component | viral capsid |
| F | 0005198 | molecular_function | structural molecule activity |
| F | 0019028 | cellular_component | viral capsid |
| G | 0005198 | molecular_function | structural molecule activity |
| G | 0019028 | cellular_component | viral capsid |
| H | 0005198 | molecular_function | structural molecule activity |
| H | 0019028 | cellular_component | viral capsid |
| I | 0005198 | molecular_function | structural molecule activity |
| I | 0019028 | cellular_component | viral capsid |
| J | 0005198 | molecular_function | structural molecule activity |
| J | 0019028 | cellular_component | viral capsid |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA A 401 |
| Chain | Residue |
| A | GLU46 |
| A | HOH700 |
| A | HOH731 |
| B | SER214 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE EDO A 402 |
| Chain | Residue |
| A | HOH695 |
| F | MET27 |
| A | GLU217 |
| A | ASN218 |
| A | ARG220 |
| A | ASP247 |
| A | GLY252 |
| site_id | AC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE EDO A 403 |
| Chain | Residue |
| A | GLN44 |
| A | SER114 |
| A | VAL115 |
| A | THR242 |
| A | ASN288 |
| A | THR290 |
| A | HOH710 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE EDO A 404 |
| Chain | Residue |
| A | ALA47 |
| A | TYR48 |
| A | HOH661 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CA B 401 |
| Chain | Residue |
| B | GLU46 |
| B | HOH660 |
| C | SER214 |
| C | GLU217 |
| C | HOH671 |
| site_id | AC6 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE EDO B 402 |
| Chain | Residue |
| B | GLU217 |
| B | ASN218 |
| B | ARG220 |
| B | ASP247 |
| B | GLY252 |
| B | PRO253 |
| B | HOH693 |
| J | MET27 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO B 403 |
| Chain | Residue |
| B | THR149 |
| B | HIS151 |
| B | PRO233 |
| B | VAL234 |
| B | MET235 |
| B | HOH604 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA C 401 |
| Chain | Residue |
| C | GLU46 |
| C | HOH679 |
| D | SER214 |
| D | HOH683 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE EDO C 402 |
| Chain | Residue |
| C | VAL119 |
| C | MET235 |
| C | GLN236 |
| C | HOH636 |
| site_id | BC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA D 401 |
| Chain | Residue |
| D | GLU46 |
| D | HOH663 |
| E | SER214 |
| E | HOH702 |
| site_id | BC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE EDO D 402 |
| Chain | Residue |
| D | SER114 |
| D | VAL115 |
| D | LYS116 |
| D | THR242 |
| D | ASN288 |
| D | VAL289 |
| D | THR290 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO D 403 |
| Chain | Residue |
| D | LYS116 |
| D | ASN239 |
| D | HOH579 |
| E | GLU217 |
| E | ARG220 |
| E | HOH534 |
| site_id | BC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CA E 401 |
| Chain | Residue |
| A | SER214 |
| A | GLU217 |
| A | HOH726 |
| A | HOH732 |
| E | GLU46 |
| E | HOH652 |
| site_id | BC5 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE EDO E 402 |
| Chain | Residue |
| E | GLN44 |
| E | SER114 |
| E | VAL115 |
| E | THR242 |
| E | ASN288 |
| E | VAL289 |
| E | THR290 |
| E | HOH603 |
| site_id | BC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO E 403 |
| Chain | Residue |
| D | GLU31 |
| E | ASN249 |
| E | GLY250 |
| E | ARG294 |
| E | HOH692 |
| G | GLY29 |
| site_id | BC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO E 404 |
| Chain | Residue |
| A | ARG220 |
| A | ASP247 |
| A | GLU248 |
| E | LYS116 |
| E | ASN239 |
| E | HOH573 |
| site_id | BC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO E 405 |
| Chain | Residue |
| E | VAL119 |
| E | MET235 |
| E | GLN236 |
| E | HOH690 |
| E | HOH698 |
| site_id | BC9 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO E 406 |
| Chain | Residue |
| E | ASP247 |
| E | GLY252 |
| G | MET27 |
| E | GLU217 |
| E | ASN218 |
| E | ARG220 |
| site_id | CC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CA F 401 |
| Chain | Residue |
| F | GLU46 |
| F | HOH630 |
| G | SER214 |
| G | GLU217 |
| G | HOH634 |
| site_id | CC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE EDO F 402 |
| Chain | Residue |
| A | MET27 |
| F | GLU217 |
| F | ASN218 |
| F | ARG220 |
| F | ASP247 |
| F | GLY252 |
| F | PRO253 |
| site_id | CC3 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE EDO F 403 |
| Chain | Residue |
| F | GLN44 |
| F | SER114 |
| F | LYS116 |
| F | THR242 |
| F | ASN288 |
| F | THR290 |
| F | HOH636 |
| site_id | CC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE EDO F 404 |
| Chain | Residue |
| F | LEU62 |
| F | ASN67 |
| F | SER68 |
| F | HOH619 |
| site_id | CC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO F 405 |
| Chain | Residue |
| F | ASN239 |
| F | HOH623 |
| G | ASN216 |
| G | ARG220 |
| G | HOH539 |
| site_id | CC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA G 401 |
| Chain | Residue |
| G | GLU46 |
| H | SER214 |
| H | HOH501 |
| H | HOH649 |
| site_id | CC7 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE EDO G 402 |
| Chain | Residue |
| G | GLN44 |
| G | SER114 |
| G | VAL115 |
| G | LYS116 |
| G | THR242 |
| G | ASN288 |
| G | THR290 |
| G | HOH613 |
| site_id | CC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO G 403 |
| Chain | Residue |
| G | VAL119 |
| G | HIS151 |
| G | MET235 |
| G | GLN236 |
| G | HOH663 |
| site_id | CC9 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE EDO G 404 |
| Chain | Residue |
| E | GLY29 |
| F | GLU31 |
| F | LEU33 |
| G | GLU111 |
| G | GLY250 |
| G | ARG292 |
| G | ARG294 |
| site_id | DC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE EDO G 405 |
| Chain | Residue |
| G | GLU217 |
| G | ASN218 |
| G | ARG220 |
| G | ASP247 |
| G | GLY252 |
| site_id | DC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE EDO G 406 |
| Chain | Residue |
| G | TYR48 |
| G | ASN50 |
| G | ARG52 |
| G | HOH656 |
| site_id | DC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA H 401 |
| Chain | Residue |
| H | GLU46 |
| H | HOH648 |
| I | SER214 |
| I | HOH609 |
| site_id | DC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE EDO H 402 |
| Chain | Residue |
| C | GLY29 |
| H | GLU31 |
| H | LEU33 |
| I | GLY250 |
| I | VAL251 |
| I | ARG294 |
| site_id | DC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA I 401 |
| Chain | Residue |
| I | GLU46 |
| I | HOH666 |
| J | SER214 |
| J | HOH671 |
| site_id | DC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE EDO I 402 |
| Chain | Residue |
| I | GLN44 |
| I | SER114 |
| I | VAL115 |
| I | LYS116 |
| I | THR242 |
| I | ASN288 |
| I | THR290 |
| site_id | DC7 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE EDO I 403 |
| Chain | Residue |
| I | LYS116 |
| I | ASN239 |
| I | HOH643 |
| I | HOH677 |
| J | ASN216 |
| J | GLU217 |
| J | ARG220 |
| site_id | DC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CA J 401 |
| Chain | Residue |
| F | SER214 |
| F | HOH687 |
| J | GLU46 |
| J | HOH669 |
| site_id | DC9 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE EDO J 402 |
| Chain | Residue |
| B | GLY29 |
| I | GLU31 |
| I | LEU33 |
| J | ASN249 |
| J | GLY250 |
| J | VAL251 |
| J | ARG294 |
| J | HOH620 |
| site_id | EC1 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE EDO J 403 |
| Chain | Residue |
| F | TYR134 |
| F | TYR274 |
| F | SER275 |
| F | GLU276 |
| J | GLY137 |
| J | SER138 |
| J | SER139 |
