4M8L
crystal structure of RpiA-R5P complex
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004751 | molecular_function | ribose-5-phosphate isomerase activity |
A | 0005829 | cellular_component | cytosol |
A | 0006014 | biological_process | D-ribose metabolic process |
A | 0006098 | biological_process | pentose-phosphate shunt |
A | 0009052 | biological_process | pentose-phosphate shunt, non-oxidative branch |
A | 0016853 | molecular_function | isomerase activity |
A | 0044281 | biological_process | small molecule metabolic process |
B | 0004751 | molecular_function | ribose-5-phosphate isomerase activity |
B | 0005829 | cellular_component | cytosol |
B | 0006014 | biological_process | D-ribose metabolic process |
B | 0006098 | biological_process | pentose-phosphate shunt |
B | 0009052 | biological_process | pentose-phosphate shunt, non-oxidative branch |
B | 0016853 | molecular_function | isomerase activity |
B | 0044281 | biological_process | small molecule metabolic process |
C | 0004751 | molecular_function | ribose-5-phosphate isomerase activity |
C | 0005829 | cellular_component | cytosol |
C | 0006014 | biological_process | D-ribose metabolic process |
C | 0006098 | biological_process | pentose-phosphate shunt |
C | 0009052 | biological_process | pentose-phosphate shunt, non-oxidative branch |
C | 0016853 | molecular_function | isomerase activity |
C | 0044281 | biological_process | small molecule metabolic process |
D | 0004751 | molecular_function | ribose-5-phosphate isomerase activity |
D | 0005829 | cellular_component | cytosol |
D | 0006014 | biological_process | D-ribose metabolic process |
D | 0006098 | biological_process | pentose-phosphate shunt |
D | 0009052 | biological_process | pentose-phosphate shunt, non-oxidative branch |
D | 0016853 | molecular_function | isomerase activity |
D | 0044281 | biological_process | small molecule metabolic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE 5RP A 301 |
Chain | Residue |
A | THR34 |
A | GLY101 |
A | GLY102 |
A | GLY103 |
A | ALA104 |
A | ALA105 |
A | GLU109 |
A | LYS127 |
A | HOH425 |
A | HOH457 |
A | HOH469 |
A | GLY35 |
A | SER36 |
A | THR37 |
A | ASP87 |
A | GLY88 |
A | ALA89 |
A | ASP90 |
A | LYS100 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ARF A 302 |
Chain | Residue |
A | VAL113 |
A | GLU189 |
A | PHE204 |
A | LYS207 |
A | HOH407 |
A | HOH480 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ARF A 303 |
Chain | Residue |
A | HIS95 |
A | ASP183 |
A | HOH492 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ARF A 304 |
Chain | Residue |
A | LYS67 |
A | PHE71 |
A | ASP72 |
site_id | AC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ARF A 305 |
Chain | Residue |
A | HIS95 |
A | GLU97 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ARF A 307 |
Chain | Residue |
A | ASP61 |
A | GLY103 |
A | HOH489 |
site_id | AC7 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE ARF A 308 |
Chain | Residue |
A | SER36 |
A | GLY39 |
A | PHE40 |
A | LYS65 |
A | HOH427 |
A | HOH432 |
A | HOH496 |
site_id | AC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ARF A 309 |
Chain | Residue |
A | HOH420 |
A | HOH421 |
site_id | AC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ARF A 311 |
Chain | Residue |
A | ASN94 |
A | HIS95 |
A | LYS96 |
site_id | BC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ARF A 312 |
Chain | Residue |
A | GLU189 |
A | ASN193 |
A | HOH480 |
C | GLN194 |
C | THR196 |
site_id | BC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ARF A 313 |
Chain | Residue |
A | LYS67 |
A | ASP72 |
A | VAL73 |
site_id | BC3 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE ARF A 314 |
Chain | Residue |
A | HOH433 |
site_id | BC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ARF A 315 |
Chain | Residue |
A | ARG64 |
A | LYS67 |
A | ALA68 |
A | LEU206 |
site_id | BC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ARF A 316 |
Chain | Residue |
A | ILE52 |
A | LYS53 |
A | PHE71 |
A | ASP72 |
A | HOH455 |
site_id | BC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL A 317 |
Chain | Residue |
A | ARG146 |
B | GLN159 |
site_id | BC7 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE 5RP B 301 |
Chain | Residue |
B | THR34 |
B | GLY35 |
B | SER36 |
B | THR37 |
B | ASP87 |
B | GLY88 |
B | ALA89 |
B | ASP90 |
B | LYS100 |
B | GLY101 |
B | GLY102 |
B | GLY103 |
B | ALA104 |
B | ALA105 |
B | GLU109 |
B | LYS127 |
B | HOH407 |
B | HOH456 |
site_id | BC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ARF B 302 |
Chain | Residue |
B | THR34 |
B | GLY103 |
B | HOH463 |
site_id | BC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ARF B 303 |
Chain | Residue |
B | HIS95 |
B | LYS96 |
B | ALA209 |
B | HOH423 |
B | HOH449 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ARF B 304 |
Chain | Residue |
B | HOH405 |
B | ALA68 |
B | LYS207 |
B | PRO208 |
B | ASP210 |
B | ARF308 |
site_id | CC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ARF B 305 |
Chain | Residue |
B | HIS95 |
B | HOH426 |
B | HOH474 |
site_id | CC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ARF B 306 |
Chain | Residue |
B | SER58 |
B | ALA105 |
B | THR107 |
B | ARG108 |
B | ASP169 |
B | ASN170 |
site_id | CC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ARF B 307 |
Chain | Residue |
B | LYS67 |
B | PHE71 |
B | ASP72 |
B | HOH459 |
site_id | CC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ARF B 308 |
Chain | Residue |
B | ALA116 |
B | LYS117 |
B | LYS207 |
B | ASP210 |
B | ARF304 |
site_id | CC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ARF B 309 |
Chain | Residue |
B | ARG64 |
B | LYS67 |
B | LEU206 |
site_id | CC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ARF B 310 |
Chain | Residue |
B | ASP75 |
B | ASN77 |
B | HOH433 |
B | HOH455 |
D | PRO143 |
site_id | CC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ARF B 311 |
Chain | Residue |
B | LYS110 |
B | GLU189 |
B | ASN193 |
B | ARF313 |
D | GLN194 |
D | THR196 |
site_id | CC9 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ARF B 312 |
Chain | Residue |
B | HIS95 |
B | GLU97 |
site_id | DC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ARF B 313 |
Chain | Residue |
B | ASN193 |
B | ARF311 |
D | ASN193 |
D | GLN194 |
D | ILE195 |
site_id | DC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ARF B 314 |
Chain | Residue |
A | GLN159 |
A | PRO160 |
B | ALA150 |
B | ARG151 |
B | VAL154 |
B | HOH402 |
site_id | DC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CL B 315 |
Chain | Residue |
B | ASP61 |
B | ARG64 |
B | ASN184 |
B | LEU186 |
site_id | DC4 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL B 316 |
Chain | Residue |
B | GLU164 |
site_id | DC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL B 317 |
Chain | Residue |
B | ARG49 |
B | ILE52 |
B | LYS53 |
site_id | DC6 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE 5RP C 301 |
Chain | Residue |
C | THR34 |
C | GLY35 |
C | SER36 |
C | THR37 |
C | ASP87 |
C | GLY88 |
C | ASP90 |
C | LYS100 |
C | GLY101 |
C | GLY102 |
C | GLY103 |
C | ALA104 |
C | ALA105 |
C | GLU109 |
C | LYS127 |
C | ARF307 |
C | HOH409 |
C | HOH422 |
C | HOH455 |
site_id | DC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ARF C 302 |
Chain | Residue |
C | SER147 |
C | ALA150 |
C | ARG151 |
C | VAL154 |
C | ARF304 |
C | HOH411 |
site_id | DC8 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE ARF C 303 |
Chain | Residue |
A | MET144 |
C | VAL56 |
C | SER57 |
C | VAL73 |
C | VAL74 |
C | ASP75 |
C | LEU76 |
C | HOH405 |
site_id | DC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ARF C 304 |
Chain | Residue |
C | ALA150 |
C | ARG151 |
C | VAL154 |
C | VAL154 |
C | ARF302 |
site_id | EC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ARF C 306 |
Chain | Residue |
C | GLU60 |
C | ARG108 |
C | ASP169 |
C | ARF308 |
site_id | EC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ARF C 307 |
Chain | Residue |
C | ASP90 |
C | PHE135 |
C | 5RP301 |
C | HOH455 |
site_id | EC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ARF C 308 |
Chain | Residue |
C | ARF306 |
C | ARF311 |
C | HOH402 |
C | HOH443 |
site_id | EC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ARF C 309 |
Chain | Residue |
C | PRO143 |
C | GLY171 |
site_id | EC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ARF C 310 |
Chain | Residue |
C | GLU60 |
C | ASP61 |
C | GLY103 |
C | ASP169 |
site_id | EC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE ARF C 311 |
Chain | Residue |
C | HIS95 |
C | GLU97 |
C | ALA205 |
C | PRO208 |
C | ARF308 |
site_id | EC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ARF C 312 |
Chain | Residue |
C | ARG163 |
C | THR166 |
C | HOH420 |
site_id | EC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL C 313 |
Chain | Residue |
C | ARG151 |
C | GLN152 |
site_id | EC9 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE 5RP D 301 |
Chain | Residue |
D | THR34 |
D | GLY35 |
D | SER36 |
D | THR37 |
D | ASP87 |
D | GLY88 |
D | ASP90 |
D | LYS100 |
D | GLY101 |
D | GLY103 |
D | ALA105 |
D | GLU109 |
D | LYS127 |
D | HOH417 |
D | HOH430 |
site_id | FC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE ARF D 302 |
Chain | Residue |
D | LYS110 |
D | GLU189 |
D | PHE204 |
D | ALA205 |
D | LEU206 |
D | LYS207 |
D | HOH435 |
site_id | FC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE ARF D 303 |
Chain | Residue |
D | TYR148 |
D | GLN152 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | ACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_00170 |
Chain | Residue | Details |
A | GLU109 | |
B | GLU109 | |
C | GLU109 | |
D | GLU109 |
site_id | SWS_FT_FI2 |
Number of Residues | 16 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00170 |
Chain | Residue | Details |
A | THR34 | |
C | ASP87 | |
C | LYS100 | |
C | LYS127 | |
D | THR34 | |
D | ASP87 | |
D | LYS100 | |
D | LYS127 | |
A | ASP87 | |
A | LYS100 | |
A | LYS127 | |
B | THR34 | |
B | ASP87 | |
B | LYS100 | |
B | LYS127 | |
C | THR34 |