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4LUJ

Crystal structure of Orotidine 5'-monophosphate decarboxylase from methanocaldococcus jannaschii complexed with inhibitor BMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE BMP A 301
ChainResidue
AASP29
AARG212
AHOH404
AHOH406
AHOH407
AHOH408
AHOH414
BASP84
BILE85
BTHR88
ALYS51
AASP79
ALYS81
AMET134
ASER135
APRO186
AGLN191
AGLY211

site_idAC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE BMP B 301
ChainResidue
AASP84
AILE85
ATHR88
BASP29
BLYS51
BASP79
BLYS81
BMET134
BSER135
BPRO186
BGLN191
BGLY211
BARG212
BHOH405
BHOH408
BHOH409
BHOH410
BHOH415

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. VIaDfKvaDIPaTN
ChainResidueDetails
AVAL76-ASN89

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000255|HAMAP-Rule:MF_01200
ChainResidueDetails
ALYS81
BLYS81

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01200
ChainResidueDetails
BLYS51
BASP79
BSER135
BPRO186
BGLY211
BARG212
AARG212
BASP29
AASP29
ALYS51
AASP79
ASER135
APRO186
AGLY211

219869

PDB entries from 2024-05-15

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