4LSE
Ion selectivity of OmpF porin soaked in 0.2M NaBr
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0001530 | molecular_function | lipopolysaccharide binding |
A | 0005216 | molecular_function | monoatomic ion channel activity |
A | 0005515 | molecular_function | protein binding |
A | 0006811 | biological_process | monoatomic ion transport |
A | 0008289 | molecular_function | lipid binding |
A | 0009279 | cellular_component | cell outer membrane |
A | 0015031 | biological_process | protein transport |
A | 0015288 | molecular_function | porin activity |
A | 0016020 | cellular_component | membrane |
A | 0034220 | biological_process | monoatomic ion transmembrane transport |
A | 0034702 | cellular_component | monoatomic ion channel complex |
A | 0042802 | molecular_function | identical protein binding |
A | 0042912 | molecular_function | colicin transmembrane transporter activity |
A | 0043213 | biological_process | bacteriocin transport |
A | 0046930 | cellular_component | pore complex |
A | 0070207 | biological_process | protein homotrimerization |
A | 0097718 | molecular_function | disordered domain specific binding |
B | 0001530 | molecular_function | lipopolysaccharide binding |
B | 0005216 | molecular_function | monoatomic ion channel activity |
B | 0005515 | molecular_function | protein binding |
B | 0006811 | biological_process | monoatomic ion transport |
B | 0008289 | molecular_function | lipid binding |
B | 0009279 | cellular_component | cell outer membrane |
B | 0015031 | biological_process | protein transport |
B | 0015288 | molecular_function | porin activity |
B | 0016020 | cellular_component | membrane |
B | 0034220 | biological_process | monoatomic ion transmembrane transport |
B | 0034702 | cellular_component | monoatomic ion channel complex |
B | 0042802 | molecular_function | identical protein binding |
B | 0042912 | molecular_function | colicin transmembrane transporter activity |
B | 0043213 | biological_process | bacteriocin transport |
B | 0046930 | cellular_component | pore complex |
B | 0070207 | biological_process | protein homotrimerization |
B | 0097718 | molecular_function | disordered domain specific binding |
C | 0001530 | molecular_function | lipopolysaccharide binding |
C | 0005216 | molecular_function | monoatomic ion channel activity |
C | 0005515 | molecular_function | protein binding |
C | 0006811 | biological_process | monoatomic ion transport |
C | 0008289 | molecular_function | lipid binding |
C | 0009279 | cellular_component | cell outer membrane |
C | 0015031 | biological_process | protein transport |
C | 0015288 | molecular_function | porin activity |
C | 0016020 | cellular_component | membrane |
C | 0034220 | biological_process | monoatomic ion transmembrane transport |
C | 0034702 | cellular_component | monoatomic ion channel complex |
C | 0042802 | molecular_function | identical protein binding |
C | 0042912 | molecular_function | colicin transmembrane transporter activity |
C | 0043213 | biological_process | bacteriocin transport |
C | 0046930 | cellular_component | pore complex |
C | 0070207 | biological_process | protein homotrimerization |
C | 0097718 | molecular_function | disordered domain specific binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE BR A 401 |
Chain | Residue |
A | LYS16 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR A 402 |
Chain | Residue |
A | GLN66 |
A | ASN68 |
A | HOH582 |
A | HOH607 |
site_id | AC3 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE BR A 403 |
Chain | Residue |
A | SER125 |
A | ARG167 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE BR A 404 |
Chain | Residue |
A | TYR40 |
A | MET38 |
A | THR39 |
site_id | AC5 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE MG A 405 |
Chain | Residue |
A | HOH696 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG A 406 |
Chain | Residue |
A | ASN207 |
A | ASN236 |
A | ASN252 |
site_id | AC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE PEG A 407 |
Chain | Residue |
A | TYR32 |
A | HOH696 |
site_id | AC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE C8E A 408 |
Chain | Residue |
A | ALA228 |
A | ALA261 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE BR B 401 |
Chain | Residue |
A | ASP126 |
A | ARG168 |
B | SER70 |
B | GLU71 |
B | GLY72 |
site_id | BC1 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE BR B 402 |
Chain | Residue |
B | LYS16 |
B | HOH516 |
site_id | BC2 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE MG B 403 |
Chain | Residue |
B | PEG404 |
site_id | BC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE PEG B 404 |
Chain | Residue |
B | TYR32 |
B | ASP121 |
B | MG403 |
site_id | BC4 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE C8E B 405 |
Chain | Residue |
B | VAL174 |
site_id | BC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE BR B 406 |
Chain | Residue |
B | PHE45 |
C | LYS16 |
C | ALA17 |
C | ARG42 |
site_id | BC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG B 407 |
Chain | Residue |
B | ASN207 |
B | ASN236 |
B | ASN252 |
B | HOH572 |
B | HOH609 |
B | HOH622 |
site_id | BC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG C 401 |
Chain | Residue |
C | ASN207 |
C | ASN236 |
C | ASN252 |
C | HOH617 |
C | HOH625 |
site_id | BC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG C 403 |
Chain | Residue |
C | ARG168 |
C | ASN170 |
C | HOH703 |
C | HOH704 |
site_id | BC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE PEG C 404 |
Chain | Residue |
C | ALA166 |
C | ARG167 |
C | SER248 |
C | GLY249 |
site_id | CC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE PEG C 405 |
Chain | Residue |
C | TYR22 |
C | GLU117 |
C | HOH706 |
Functional Information from PROSITE/UniProt
site_id | PS00576 |
Number of Residues | 17 |
Details | GRAM_NEG_PORIN General diffusion Gram-negative porins signature. FevGatYyFnKnmSTYV |
Chain | Residue | Details |
A | PHE295-VAL311 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 510 |
Details | TRANSMEM: Beta stranded |
Chain | Residue | Details |
A | ALA1-LYS6 | |
A | GLY184-ASP195 | |
A | ALA211-ALA222 | |
A | ASN224-ARG235 | |
A | LYS253-PHE265 | |
A | GLY268-LYS281 | |
A | VAL292-PHE303 | |
A | ASN306-ILE315 | |
A | THR331-PHE340 | |
B | ALA1-LYS6 | |
B | GLY8-PHE23 | |
A | GLY8-PHE23 | |
B | THR39-ILE51 | |
B | ASP54-GLN66 | |
B | LEU83-ALA91 | |
B | GLY94-ARG100 | |
B | GLY135-ASN141 | |
B | GLY150-GLY159 | |
B | ASP172-TYR182 | |
B | GLY184-ASP195 | |
B | ALA211-ALA222 | |
B | ASN224-ARG235 | |
A | THR39-ILE51 | |
B | LYS253-PHE265 | |
B | GLY268-LYS281 | |
B | VAL292-PHE303 | |
B | ASN306-ILE315 | |
B | THR331-PHE340 | |
C | ALA1-LYS6 | |
C | GLY8-PHE23 | |
C | THR39-ILE51 | |
C | ASP54-GLN66 | |
C | LEU83-ALA91 | |
A | ASP54-GLN66 | |
C | GLY94-ARG100 | |
C | GLY135-ASN141 | |
C | GLY150-GLY159 | |
C | ASP172-TYR182 | |
C | GLY184-ASP195 | |
C | ALA211-ALA222 | |
C | ASN224-ARG235 | |
C | LYS253-PHE265 | |
C | GLY268-LYS281 | |
C | VAL292-PHE303 | |
A | LEU83-ALA91 | |
C | ASN306-ILE315 | |
C | THR331-PHE340 | |
A | GLY94-ARG100 | |
A | GLY135-ASN141 | |
A | GLY150-GLY159 | |
A | ASP172-TYR182 |
site_id | SWS_FT_FI2 |
Number of Residues | 42 |
Details | TOPO_DOM: Periplasmic |
Chain | Residue | Details |
A | ASP7 | |
B | ASN52-SER53 | |
B | ASP92-VAL93 | |
B | SER142-ASP149 | |
B | GLU183 | |
B | ASN223 | |
B | ASP266-PHE267 | |
B | ASN304-LYS305 | |
C | ASP7 | |
C | ASN52-SER53 | |
C | ASP92-VAL93 | |
A | ASN52-SER53 | |
C | SER142-ASP149 | |
C | GLU183 | |
C | ASN223 | |
C | ASP266-PHE267 | |
C | ASN304-LYS305 | |
A | ASP92-VAL93 | |
A | SER142-ASP149 | |
A | GLU183 | |
A | ASN223 | |
A | ASP266-PHE267 | |
A | ASN304-LYS305 | |
B | ASP7 |
site_id | SWS_FT_FI3 |
Number of Residues | 378 |
Details | TOPO_DOM: Extracellular |
Chain | Residue | Details |
A | SER24-MET38 | |
B | GLY67-ARG82 | |
B | ASN101-GLY134 | |
B | LYS160-GLY171 | |
B | ARG196-LYS210 | |
B | ASN236-ASN252 | |
B | ASP282-LEU291 | |
B | ASN316-ASP330 | |
C | SER24-MET38 | |
C | GLY67-ARG82 | |
C | ASN101-GLY134 | |
A | GLY67-ARG82 | |
C | LYS160-GLY171 | |
C | ARG196-LYS210 | |
C | ASN236-ASN252 | |
C | ASP282-LEU291 | |
C | ASN316-ASP330 | |
A | ASN101-GLY134 | |
A | LYS160-GLY171 | |
A | ARG196-LYS210 | |
A | ASN236-ASN252 | |
A | ASP282-LEU291 | |
A | ASN316-ASP330 | |
B | SER24-MET38 |