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4LLT

Crystal structure of a farnesyl diphosphate synthase from Roseobacter denitrificans OCh 114, target EFI-509393, with two IPP and calcium bound in active site

Functional Information from GO Data
ChainGOidnamespacecontents
A0004337molecular_functiongeranyltranstransferase activity
A0004659molecular_functionprenyltransferase activity
A0005737cellular_componentcytoplasm
A0008299biological_processisoprenoid biosynthetic process
A0016740molecular_functiontransferase activity
A0046872molecular_functionmetal ion binding
B0004337molecular_functiongeranyltranstransferase activity
B0004659molecular_functionprenyltransferase activity
B0005737cellular_componentcytoplasm
B0008299biological_processisoprenoid biosynthetic process
B0016740molecular_functiontransferase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE IPE A 301
ChainResidue
AGLY40
AIPE302
AHOH404
AHOH409
AHOH410
AHOH423
AHOH424
AHOH436
ALYS41
AARG44
AHIS73
ALEU77
AARG92
ATHR179
APHE212
AASP216

site_idAC2
Number of Residues16
DetailsBINDING SITE FOR RESIDUE IPE A 302
ChainResidue
ASER76
AASP80
AASP86
AARG91
AMET149
ALYS178
AASP216
ALYS230
AIPE301
ACA303
ACA304
AHOH457
AHOH464
AHOH537
AHOH538
AHOH540

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 303
ChainResidue
AASP216
AIPE302
AHOH458
AHOH472
AHOH489

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 304
ChainResidue
AASP80
AASP86
AIPE302
AHOH462
AHOH538

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 305
ChainResidue
AASP86
AASP156
AGLU160
AHOH457
AHOH464
AHOH527
AHOH528

site_idAC6
Number of Residues16
DetailsBINDING SITE FOR RESIDUE IPE B 301
ChainResidue
BGLY40
BLYS41
BARG44
BHIS73
BLEU77
BARG92
BTHR179
BPHE212
BASP216
BIPE302
BHOH410
BHOH420
BHOH430
BHOH439
BHOH446
BHOH456

site_idAC7
Number of Residues14
DetailsBINDING SITE FOR RESIDUE IPE B 302
ChainResidue
BLEU77
BASP80
BASP86
BARG91
BLYS178
BASP216
BLYS230
BIPE301
BCA303
BCA304
BHOH519
BHOH538
BHOH545
BHOH546

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 303
ChainResidue
BASP80
BASP86
BIPE302
BHOH497
BHOH537

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 304
ChainResidue
BASP216
BIPE302
BHOH443
BHOH451
BHOH514

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 305
ChainResidue
BASP86
BASP156
BHOH519
BHOH520
BHOH521
BHOH539

Functional Information from PROSITE/UniProt
site_idPS00444
Number of Residues13
DetailsPOLYPRENYL_SYNTHASE_2 Polyprenyl synthases signature 2. LGlaFQIaDDIlD
ChainResidueDetails
ALEU208-ASP220

site_idPS00723
Number of Residues17
DetailsPOLYPRENYL_SYNTHASE_1 Polyprenyl synthases signature 1. LVhDDlpcmDnddmRRG
ChainResidueDetails
ALEU77-GLY93

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PDB entries from 2024-10-30

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