Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

4LLF

Crystal structure of Cucumber Necrosis Virus

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003723	molecular_function	RNA binding
A	0005198	molecular_function	structural molecule activity
A	0019028	cellular_component	viral capsid
A	0039617	cellular_component	T=3 icosahedral viral capsid
A	0044423	cellular_component	virion component
B	0003723	molecular_function	RNA binding
B	0005198	molecular_function	structural molecule activity
B	0019028	cellular_component	viral capsid
B	0039617	cellular_component	T=3 icosahedral viral capsid
B	0044423	cellular_component	virion component
D	0003723	molecular_function	RNA binding
D	0005198	molecular_function	structural molecule activity
D	0019028	cellular_component	viral capsid
D	0039617	cellular_component	T=3 icosahedral viral capsid
D	0044423	cellular_component	virion component
E	0003723	molecular_function	RNA binding
E	0005198	molecular_function	structural molecule activity
E	0019028	cellular_component	viral capsid
E	0039617	cellular_component	T=3 icosahedral viral capsid
E	0044423	cellular_component	virion component
F	0003723	molecular_function	RNA binding
F	0005198	molecular_function	structural molecule activity
F	0019028	cellular_component	viral capsid
F	0039617	cellular_component	T=3 icosahedral viral capsid
F	0044423	cellular_component	virion component
G	0003723	molecular_function	RNA binding
G	0005198	molecular_function	structural molecule activity
G	0019028	cellular_component	viral capsid
G	0039617	cellular_component	T=3 icosahedral viral capsid
G	0044423	cellular_component	virion component
H	0003723	molecular_function	RNA binding
H	0005198	molecular_function	structural molecule activity
H	0019028	cellular_component	viral capsid
H	0039617	cellular_component	T=3 icosahedral viral capsid
H	0044423	cellular_component	virion component
I	0003723	molecular_function	RNA binding
I	0005198	molecular_function	structural molecule activity
I	0019028	cellular_component	viral capsid
I	0039617	cellular_component	T=3 icosahedral viral capsid
I	0044423	cellular_component	virion component
J	0003723	molecular_function	RNA binding
J	0005198	molecular_function	structural molecule activity
J	0019028	cellular_component	viral capsid
J	0039617	cellular_component	T=3 icosahedral viral capsid
J	0044423	cellular_component	virion component
K	0003723	molecular_function	RNA binding
K	0005198	molecular_function	structural molecule activity
K	0019028	cellular_component	viral capsid
K	0039617	cellular_component	T=3 icosahedral viral capsid
K	0044423	cellular_component	virion component
L	0003723	molecular_function	RNA binding
L	0005198	molecular_function	structural molecule activity
L	0019028	cellular_component	viral capsid
L	0039617	cellular_component	T=3 icosahedral viral capsid
L	0044423	cellular_component	virion component
M	0003723	molecular_function	RNA binding
M	0005198	molecular_function	structural molecule activity
M	0019028	cellular_component	viral capsid
M	0039617	cellular_component	T=3 icosahedral viral capsid
M	0044423	cellular_component	virion component
N	0003723	molecular_function	RNA binding
N	0005198	molecular_function	structural molecule activity
N	0019028	cellular_component	viral capsid
N	0039617	cellular_component	T=3 icosahedral viral capsid
N	0044423	cellular_component	virion component
O	0003723	molecular_function	RNA binding
O	0005198	molecular_function	structural molecule activity
O	0019028	cellular_component	viral capsid
O	0039617	cellular_component	T=3 icosahedral viral capsid
O	0044423	cellular_component	virion component
P	0003723	molecular_function	RNA binding
P	0005198	molecular_function	structural molecule activity
P	0019028	cellular_component	viral capsid
P	0039617	cellular_component	T=3 icosahedral viral capsid
P	0044423	cellular_component	virion component

Functional Information from PDB Data

site_id	AC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA B 401

Chain	Residue
A	ASP173
A	ASP175
A	ASP178
B	ASP145
B	GLN258

site_id	AC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA B 402

Chain	Residue
D	GLN258
B	ASP173
B	ASP175
B	ASP178
D	ASP145

site_id	AC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN D 401

Chain	Residue
D	HIS62
J	HIS62
J	ZN401
P	HIS62
P	ZN401

site_id	AC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CA D 402

Chain	Residue
A	ASP145
A	GLN258
D	ASP173
D	ASP178

site_id	AC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CA E 401

Chain	Residue
E	ASP145
E	GLN258
G	ASP173
G	ASP178

site_id	AC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA E 402

Chain	Residue
E	ASP173
E	ASP175
E	ASP178
F	ASP145
F	GLN258

site_id	AC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA F 401

Chain	Residue
F	ASP173
F	ASP175
F	ASP178
G	ASP145
G	GLN258

site_id	AC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ZN G 401

Chain	Residue
G	HIS62
G	HIS62
G	HIS62

site_id	AC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CA H 401

Chain	Residue
H	ASP145
H	GLN258
J	ASP173
J	ASP178

site_id	BC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA I 401

Chain	Residue
H	ASP173
H	ASP175
H	ASP178
I	ASP145
I	GLN258

site_id	BC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CA I 402

Chain	Residue
I	ASP175
I	ASP178
J	ASP145
J	GLN258

site_id	BC3
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN J 401

Chain	Residue
D	HIS62
D	ZN401
J	HIS62
P	HIS62
P	ZN401

site_id	BC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CA K 401

Chain	Residue
K	ASP145
K	GLN258
M	ASP173
M	ASP178

site_id	BC5
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA K 402

Chain	Residue
K	ASP173
K	ASP175
K	ASP178
L	ASP145
L	GLN258

site_id	BC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE ZN M 401

Chain	Residue
M	HIS62
M	HIS62
M	HIS62

site_id	BC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CA M 402

Chain	Residue
L	ASP173
L	ASP178
M	ASP145
M	GLN258

site_id	BC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CA N 401

Chain	Residue
N	ASP145
N	GLN258
P	ASP173
P	ASP178

site_id	BC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CA O 401

Chain	Residue
O	ASP173
O	ASP178
P	ASP145
P	GLN258

site_id	CC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CA O 402

Chain	Residue
N	ASP173
N	ASP175
N	ASP178
O	ASP145
O	GLN258

site_id	CC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN P 401

Chain	Residue
D	HIS62
D	ZN401
J	HIS62
J	ZN401
P	HIS62

Functional Information from PROSITE/UniProt

site_id	PS00555
Number of Residues	26
Details	ICOSAH_VIR_COAT_S Plant viruses icosahedral capsid proteins 'S' region signature. YvPlvntttnGrVaLyFdkDsedpgP

Chain	Residue	Details
A	TYR156-PRO181

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2415
Details	Region: {"description":"S domain, virion shell"}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	1875
Details	Region: {"description":"P domain, projecting"}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)