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4LC8

Crystal structure of the mutant H128N of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with the inhibitor BMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
A0005829cellular_componentcytosol
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0016831molecular_functioncarboxy-lyase activity
A0044205biological_process'de novo' UMP biosynthetic process
B0004590molecular_functionorotidine-5'-phosphate decarboxylase activity
B0005829cellular_componentcytosol
B0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
B0006221biological_processpyrimidine nucleotide biosynthetic process
B0016831molecular_functioncarboxy-lyase activity
B0044205biological_process'de novo' UMP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues21
DetailsBINDING SITE FOR RESIDUE BMP A 301
ChainResidue
AASP20
AGLY202
AARG203
AHOH406
AHOH408
AHOH413
AHOH415
AHOH416
AHOH420
AHOH423
BASP75
ALYS42
BILE76
BTHR79
AASP70
ALYS72
AMET126
ASER127
APRO180
AVAL182
AGLN185

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 302
ChainResidue
AASP104
BGLY130

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 303
ChainResidue
AARG160
APRO161
AGLU162

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 304
ChainResidue
APRO77
AGLU78
AHOH585
BHOH453

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 305
ChainResidue
AHOH546
AHOH622
AHOH653
BHOH655
BHOH667

site_idAC6
Number of Residues20
DetailsBINDING SITE FOR RESIDUE BMP B 301
ChainResidue
AASP75
AILE76
ATHR79
BASP20
BLYS42
BASP70
BLYS72
BMET126
BSER127
BPRO180
BGLN185
BGLY202
BARG203
BHOH401
BHOH402
BHOH405
BHOH407
BHOH410
BHOH420
BHOH461

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 302
ChainResidue
AGLY130
BASP104
BARG107

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 303
ChainResidue
AHOH472
AHOH651
BPRO77
BGLU78
BHOH664

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO B 304
ChainResidue
BLEU21
BMET22
BASN23
BHOH583
BHOH628
BHOH645
BHOH654

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 305
ChainResidue
BSER221
BHOH455
BHOH484
BHOH535
BHOH539
BHOH595

Functional Information from PROSITE/UniProt
site_idPS00156
Number of Residues14
DetailsOMPDECASE Orotidine 5'-phosphate decarboxylase active site. IIaDfKvaDIPeTN
ChainResidueDetails
AILE67-ASN80

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor
ChainResidueDetails
ALYS72
BLYS72

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING:
ChainResidueDetails
AASP20
BASP70
BSER127
BPRO180
BGLY202
BARG203
ALYS42
AASP70
ASER127
APRO180
AGLY202
AARG203
BASP20
BLYS42

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PDB entries from 2024-07-17

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