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4KQK

Crystal structure of CobT S80Y/Q88M/L175M complexed with p-cresol

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0008939molecular_functionnicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
A0009236biological_processcobalamin biosynthetic process
A0016757molecular_functionglycosyltransferase activity
B0000166molecular_functionnucleotide binding
B0008939molecular_functionnicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
B0009236biological_processcobalamin biosynthetic process
B0016757molecular_functionglycosyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 401
ChainResidue
AARG38
AARG282
AMET305
AGLU306
AHOH518
AHOH531

site_idAC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 A 402
ChainResidue
AGLY202
AALA203
AHOH504
AHOH535
AHOH579
AHOH607
AHOH621
AALA178
AASN179
ATHR180

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PCR A 403
ChainResidue
ATYR80
AHOH668
BPRO32
BLEU341

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 404
ChainResidue
AGLN23
AASP27
AGLU40
AHOH533
AHOH628

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 405
ChainResidue
AALA13
AASP15
APRO50
AHOH582

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 406
ChainResidue
ALEU323
APRO326
AILE327
BLEU323
BPRO326

site_idAC7
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SO4 B 701
ChainResidue
BALA178
BASN179
BTHR180
BGLY202
BALA203
BHOH824
BHOH825
BHOH920
BHOH942
BHOH944
BHOH945

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 702
ChainResidue
BARG38
BARG282
BPRO287
BSER304
BMET305
BGLU306
BHOH810
BHOH906

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PCR B 703
ChainResidue
ALYS31
ALEU341
BHOH991

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305|PubMed:11441022
ChainResidueDetails
AMET88
BMET88

site_idSWS_FT_FI2
Number of Residues10
DetailsBINDING: BINDING => ECO:0000269|PubMed:24121107, ECO:0000269|DOI:10.1074/jbc.M203535200
ChainResidueDetails
APHE265
ASER291
AARG314
BGLU174
BALA203
BPHE265
BSER291
BARG314
AGLU174
AALA203

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Important for substrate positioning, might be proton acceptor => ECO:0000269|PubMed:24121107
ChainResidueDetails
AGLU174
BGLU174

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Important for substrate positioning, might be proton acceptor => ECO:0000269|PubMed:24121107, ECO:0000305|PubMed:10587435, ECO:0000305|DOI:10.1074/jbc.M203535200
ChainResidueDetails
AGLU317
BGLU317

Catalytic Information from CSA
site_idMCSA1
Number of Residues2
DetailsM-CSA 79
ChainResidueDetails
AGLU174electrostatic stabiliser, unknown
AGLU317activator, hydrogen bond acceptor, proton acceptor, unknown

site_idMCSA2
Number of Residues2
DetailsM-CSA 79
ChainResidueDetails
BGLU174electrostatic stabiliser, unknown
BGLU317activator, hydrogen bond acceptor, proton acceptor, unknown

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PDB entries from 2024-05-15

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