| Chain | GOid | namespace | contents |
| A | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
| A | 0001843 | biological_process | neural tube closure |
| A | 0001947 | biological_process | heart looping |
| A | 0003281 | biological_process | ventricular septum development |
| A | 0003714 | molecular_function | transcription corepressor activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005654 | cellular_component | nucleoplasm |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0005929 | cellular_component | cilium |
| A | 0006355 | biological_process | regulation of DNA-templated transcription |
| A | 0007165 | biological_process | signal transduction |
| A | 0007224 | biological_process | smoothened signaling pathway |
| A | 0007286 | biological_process | spermatid development |
| A | 0007368 | biological_process | determination of left/right symmetry |
| A | 0008013 | molecular_function | beta-catenin binding |
| A | 0008134 | molecular_function | transcription factor binding |
| A | 0019901 | molecular_function | protein kinase binding |
| A | 0021513 | biological_process | spinal cord dorsal/ventral patterning |
| A | 0021775 | biological_process | smoothened signaling pathway involved in ventral spinal cord interneuron specification |
| A | 0021776 | biological_process | smoothened signaling pathway involved in spinal cord motor neuron cell fate specification |
| A | 0035904 | biological_process | aorta development |
| A | 0042308 | biological_process | negative regulation of protein import into nucleus |
| A | 0043433 | biological_process | negative regulation of DNA-binding transcription factor activity |
| A | 0043588 | biological_process | skin development |
| A | 0045668 | biological_process | negative regulation of osteoblast differentiation |
| A | 0045879 | biological_process | negative regulation of smoothened signaling pathway |
| A | 0060976 | biological_process | coronary vasculature development |
| A | 0097542 | cellular_component | ciliary tip |
| A | 0097546 | cellular_component | ciliary base |
| A | 1990788 | cellular_component | GLI-SUFU complex |
| A | 2000059 | biological_process | negative regulation of ubiquitin-dependent protein catabolic process |
| A | 2001040 | biological_process | positive regulation of cellular response to drug |
