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4KGD

High-resolution crystal structure of pyruvate oxidase from L. plantarum in complex with phosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003824molecular_functioncatalytic activity
A0030976molecular_functionthiamine pyrophosphate binding
A0047112molecular_functionpyruvate oxidase activity
B0000287molecular_functionmagnesium ion binding
B0003824molecular_functioncatalytic activity
B0030976molecular_functionthiamine pyrophosphate binding
B0047112molecular_functionpyruvate oxidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues35
DetailsBINDING SITE FOR RESIDUE FAD A 701
ChainResidue
AHIS101
AARG264
AVAL265
AGLY284
AASN285
AASN286
ATYR287
APRO288
APHE289
AASP306
AILE307
APHE121
AASP308
ALYS311
AASP325
AALA326
AASN398
ASER416
AASN417
AHOH802
AHOH811
AHOH847
AGLY220
AHOH1078
AHOH1079
AHOH1184
AHOH1202
AHOH1342
AHOH1485
AILE221
AGLY222
ATHR244
ATYR245
AALA262
AASN263

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 702
ChainResidue
AASP447
AASN474
AGLN476
ATPP704
AHOH803

site_idAC3
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PO4 A 703
ChainResidue
AGLY34
AGLY35
ASER36
ASER82
APHE111
AGLN122
AILE480
ATPP704
AHOH912
AHOH1019
AHOH1487
AHOH1598

site_idAC4
Number of Residues27
DetailsBINDING SITE FOR RESIDUE TPP A 704
ChainResidue
APRO33
AGLU59
ASER82
APRO85
AHIS89
AGLN122
AVAL394
AASP396
AALA420
AMET422
AGLY446
AASP447
AGLY448
AGLY449
AASN474
AGLN476
ATYR477
AGLY478
APHE479
AILE480
AMG702
APO4703
AHOH803
AHOH820
AHOH824
AHOH846
AHOH1487

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 705
ChainResidue
AALA23
ATRP24
ALYS75
ATYR158
AALA186
ATYR189
AHOH1024
AHOH1421

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 706
ChainResidue
ALYS433
APRO437
AGLU438
APRO466
AALA533
AGLN534
AHOH1089
AHOH1121
AHOH1373

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 707
ChainResidue
AHOH1291
AHOH1444
ATRP174
ATHR487
AGLN489

site_idAC8
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 708
ChainResidue
AARG264
AGLU483
AASP486
AGLU553
AHOH1029
AHOH1222
AHOH1347
AHOH1483
AHOH1496
AHOH1629

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE K A 709
ChainResidue
AMET452
AMET452
AGLN455
AGLN455
AHOH825
AHOH825

site_idBC1
Number of Residues36
DetailsBINDING SITE FOR RESIDUE FAD B 701
ChainResidue
BHIS101
BPHE121
BGLY220
BILE221
BGLY222
BTHR244
BTYR245
BPRO246
BALA262
BASN263
BARG264
BVAL265
BGLY284
BASN285
BASN286
BTYR287
BPRO288
BPHE289
BASP306
BILE307
BASP308
BLYS311
BASP325
BALA326
BASN398
BSER416
BASN417
BHOH801
BHOH807
BHOH816
BHOH819
BHOH1132
BHOH1133
BHOH1336
BHOH1498
BHOH1553

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B 702
ChainResidue
BASP447
BASN474
BGLN476
BTPP703
BHOH802

site_idBC3
Number of Residues27
DetailsBINDING SITE FOR RESIDUE TPP B 703
ChainResidue
BPRO33
BGLU59
BSER82
BPRO85
BHIS89
BGLN122
BVAL394
BASP396
BALA420
BMET422
BGLY446
BASP447
BGLY448
BGLY449
BASN474
BGLN476
BTYR477
BGLY478
BPHE479
BILE480
BMG702
BPO4704
BHOH802
BHOH817
BHOH821
BHOH855
BHOH1496

site_idBC4
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PO4 B 704
ChainResidue
BGLY34
BGLY35
BSER36
BSER82
BPHE111
BGLN122
BILE480
BTPP703
BHOH873
BHOH1030
BHOH1356
BHOH1496

site_idBC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 705
ChainResidue
BLYS433
BPRO437
BGLU438
BPRO466
BALA533
BGLN534
BHOH1176
BHOH1235

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 706
ChainResidue
BTHR487
BHOH1306
BHOH1712

site_idBC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 707
ChainResidue
AHOH1083
BALA569
BPHE570
BARG573
BTYR574
BHOH961
BHOH980
BHOH1187
BHOH1379

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 708
ChainResidue
BPRO409
BSER410
BASN411
BARG412
BTYR436
BARG439
BGOL709

site_idBC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 709
ChainResidue
BPRO409
BARG412
BGOL708
BHOH917
BHOH939
BHOH996
BHOH1558

Functional Information from PROSITE/UniProt
site_idPS00187
Number of Residues20
DetailsTPP_ENZYMES Thiamine pyrophosphate enzymes signature. IAaklnyPerqvFnLaGDGG
ChainResidueDetails
AILE430-GLY449

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PDB entries from 2024-07-24

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