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4KFD

Crystal structure of Hansenula polymorpha copper amine oxidase-1 reduced by methylamine at pH 6.0

Functional Information from GO Data
ChainGOidnamespacecontents
A0005507molecular_functioncopper ion binding
A0005777cellular_componentperoxisome
A0008131molecular_functionprimary amine oxidase activity
A0009308biological_processamine metabolic process
A0016491molecular_functionoxidoreductase activity
A0046872molecular_functionmetal ion binding
A0048038molecular_functionquinone binding
A0052595molecular_functionaliphatic amine oxidase activity
B0005507molecular_functioncopper ion binding
B0005777cellular_componentperoxisome
B0008131molecular_functionprimary amine oxidase activity
B0009308biological_processamine metabolic process
B0016491molecular_functionoxidoreductase activity
B0046872molecular_functionmetal ion binding
B0048038molecular_functionquinone binding
B0052595molecular_functionaliphatic amine oxidase activity
C0005507molecular_functioncopper ion binding
C0005777cellular_componentperoxisome
C0008131molecular_functionprimary amine oxidase activity
C0009308biological_processamine metabolic process
C0016491molecular_functionoxidoreductase activity
C0046872molecular_functionmetal ion binding
C0048038molecular_functionquinone binding
C0052595molecular_functionaliphatic amine oxidase activity
D0005507molecular_functioncopper ion binding
D0005777cellular_componentperoxisome
D0008131molecular_functionprimary amine oxidase activity
D0009308biological_processamine metabolic process
D0016491molecular_functionoxidoreductase activity
D0046872molecular_functionmetal ion binding
D0048038molecular_functionquinone binding
D0052595molecular_functionaliphatic amine oxidase activity
E0005507molecular_functioncopper ion binding
E0005777cellular_componentperoxisome
E0008131molecular_functionprimary amine oxidase activity
E0009308biological_processamine metabolic process
E0016491molecular_functionoxidoreductase activity
E0046872molecular_functionmetal ion binding
E0048038molecular_functionquinone binding
E0052595molecular_functionaliphatic amine oxidase activity
F0005507molecular_functioncopper ion binding
F0005777cellular_componentperoxisome
F0008131molecular_functionprimary amine oxidase activity
F0009308biological_processamine metabolic process
F0016491molecular_functionoxidoreductase activity
F0046872molecular_functionmetal ion binding
F0048038molecular_functionquinone binding
F0052595molecular_functionaliphatic amine oxidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CU A 801
ChainResidue
AHIS456
AHIS458
AHIS624
APEO802
AHOH1428

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEO A 802
ChainResidue
ACU801
AHOH1052
AHOH1428
ATYY405
AHIS456
AHIS624
AMET634

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 803
ChainResidue
AGLN66
AGLN70
AGLY72
AHOH954
AHOH1348
FTYR534
FTHR650

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 804
ChainResidue
ALYS214
AVAL215
AGLY435
AASP436
AHOH1131

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 805
ChainResidue
AGLU368
ALYS393
AVAL412
AASP422
AHOH1069
AHOH1561
AHOH1579
BGLY371

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 806
ChainResidue
APRO484
AHOH1690
BPRO442

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 807
ChainResidue
AHIS218
ALYS219
ATYR448

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 808
ChainResidue
ALYS561
ASER591
AHOH1245
FLYS561
FASP593
FGOL811
FHOH996

site_idAC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 809
ChainResidue
ATRP67
ALYS68
FHOH1636

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 810
ChainResidue
AGLY142
APRO144
AGLU147
ATYR177
AHOH1678
EHOH1355

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 811
ChainResidue
AARG61
ALYS62
AILE65
AASP471
AASP613
AHOH1323
AHOH1533
AHOH1663

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 812
ChainResidue
AASP131
AVAL203
AILE204
AHOH1495
AHOH1698
FGLU110

site_idBC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 813
ChainResidue
APRO59
AARG61
AHIS294
ATYR575
AASN578
AHOH911
AHOH1139
AHOH1302
AHOH1407

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 814
ChainResidue
ASER251
ALYS253
AGLU260
AHOH1191
AHOH1255

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CU B 801
ChainResidue
BHIS456
BHIS458
BHIS624
BPEO802

site_idBC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PEO B 802
ChainResidue
BTYY405
BLEU429
BHIS456
BHIS458
BHIS624
BMET634
BCU801
BHOH1096

site_idBC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 803
ChainResidue
BASP422
BHOH1031
BHOH1527
AGLY371
BGLU368
BLYS393
BVAL412
BARG420

site_idBC9
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL B 804
ChainResidue
BPRO59
BALA60
BARG61
BHIS294
BTYR575
BASN578
BHOH908
BHOH1039
BHOH1051
BHOH1287

site_idCC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 805
ChainResidue
APRO442
BPRO484
BTYR499

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 806
ChainResidue
ATYR534
BHIS218
BLYS219
BTYR448
BPO4810
BHOH1636

site_idCC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 807
ChainResidue
BLYS561
BSER591
BHOH990
BHOH1399
CLYS561
CASP593
CGOL811

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 808
ChainResidue
BARG61
BASP613
BHOH1516
BHOH1635
DHOH1396

site_idCC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 809
ChainResidue
BLYS214
BVAL215
BASP436
BASN450
BHOH1023
BHOH1659

site_idCC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 B 810
ChainResidue
BHIS218
BLYS219
BGOL806

site_idCC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 811
ChainResidue
BGLY142
BPRO144
BGLU147
BTYR177
BVAL215
BHOH1147
DHOH1545

site_idCC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CU C 801
ChainResidue
CHIS456
CHIS458
CHIS624
CPEO802
CHOH1427

site_idCC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PEO C 802
ChainResidue
CTYY405
CHIS456
CHIS458
CHIS624
CMET634
CCU801
CHOH990
CHOH1427

site_idDC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL C 803
ChainResidue
CHIS23
CTYR64
CLYS68
CLYS265
CASP280
CHOH965
CHOH1543

site_idDC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL C 804
ChainResidue
CLYS214
CVAL215
CGLY435
CASP436
CHOH1252

site_idDC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL C 805
ChainResidue
BLYS68
CHOH1556

site_idDC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL C 806
ChainResidue
CGLU368
CLYS393
CVAL412
CARG420
CASP422
CHOH1034
CHOH1590
DGLY371

site_idDC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL C 807
ChainResidue
CPRO484
CTYR499
DPRO442

site_idDC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PO4 C 808
ChainResidue
CHIS218
CLYS219

site_idDC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL C 809
ChainResidue
BGLN66
BGLN70
BGLY72
CTYR534
CTHR650
CGLU651
CHOH942
CHOH1509
DLYS231

site_idDC8
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL C 810
ChainResidue
CARG57
CTYR80
CASN578
CTYR581
CASP585
CHOH1146
CHOH1257
CHOH1361
CHOH1412
CHOH1516

site_idDC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL C 811
ChainResidue
BLYS561
BASP593
BGOL807
BHOH990
CTYR160
CLYS561
CSER591
CHOH1535

site_idEC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CU D 801
ChainResidue
DHIS456
DHIS458
DHIS624
DPEO802
DHOH1473

site_idEC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PEO D 802
ChainResidue
DTYY405
DHIS456
DHIS458
DHIS624
DMET634
DCU801
DHOH905

site_idEC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL D 803
ChainResidue
DGLY142
DPRO144
DGLU147
DTYR177
DLYS217
DGOL804
DHOH1226
DHOH1608

site_idEC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL D 804
ChainResidue
DLYS150
DTYR177
DGOL803
DHOH1322
DHOH1529

site_idEC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL D 806
ChainResidue
BLYS62
BALA63
BGLN66
BPRO73
BHOH1010
BHOH1348
BHOH1625
DLYS231
DVAL232
DGLY233

site_idEC6
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL D 807
ChainResidue
CGLY371
DGLU368
DLYS393
DVAL412
DARG420
DASP422
DARG424
DHOH1095
DHOH1275
DHOH1541
DHOH1570

site_idEC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL D 808
ChainResidue
DPRO18
DALA19
DALA99

site_idEC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL D 809
ChainResidue
DHIS23
DTYR64
DLYS68
DLYS265
DASP280
DHOH1006

site_idEC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL D 810
ChainResidue
DTRP67
DLYS68

site_idFC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL D 811
ChainResidue
DLEU56
DARG57
DTYR80
DLEU580
DHOH1090
DHOH1187
DHOH1634

site_idFC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CU E 801
ChainResidue
EHIS456
EHIS458
EHIS624
EPEO802
EHOH1439

site_idFC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PEO E 802
ChainResidue
ETYY405
EHIS456
EHIS458
EHIS624
EMET634
ECU801
EHOH903
EHOH1439

site_idFC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL E 803
ChainResidue
EGLY142
EPRO144
EGLU147
ETYR177
ELYS217
EHOH1249

site_idFC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL E 804
ChainResidue
EPHE252
ELYS253
EMET254
EILE342
EHIS343
EHOH1507
EHOH1656

site_idFC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL E 805
ChainResidue
EGLU58
EPRO59
ETYR575
EASP577
EASN578
EHOH947
EHOH1524

site_idFC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE GOL E 806
ChainResidue
EPRO484
FPRO442

site_idFC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL E 807
ChainResidue
EHIS23
ETYR64
ELYS68
ELYS265
EASP280
EHOH975

site_idFC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL E 808
ChainResidue
EGLU368
ELYS393
EARG420
EASP422
EARG424
EHOH1036
EHOH1307
EHOH1450
FGLY371

site_idGC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CU F 801
ChainResidue
FHIS456
FHIS458
FHIS624
FPEO802
FHOH1402

site_idGC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PEO F 802
ChainResidue
FTYY405
FLEU429
FHIS456
FHIS458
FHIS624
FMET634
FCU801
FHOH986

site_idGC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL F 803
ChainResidue
FHIS23
FTYR64
FLYS68
FLYS265
FASP280
FHOH948
FHOH1470

site_idGC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL F 804
ChainResidue
EGLY371
FLYS393
FVAL412
FARG420
FASP422
FGOL805
FHOH1039

site_idGC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL F 805
ChainResidue
EGLY371
EARG390
FASP337
FCYS338
FLYS339
FGLU368
FGOL804
FHOH1338

site_idGC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL F 806
ChainResidue
FPHE252
FLYS253
FMET254
FHIS343
FHOH1202
FHOH1530

site_idGC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL F 807
ChainResidue
FPRO484
FTYR485
FTYR499

site_idGC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PO4 F 808
ChainResidue
FHIS218
FLYS219

site_idGC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL F 809
ChainResidue
FLEU512
FASP604
FGLY605
FHOH1072
FHOH1382
FHOH1566
FHOH1628

site_idHC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL F 810
ChainResidue
AGLU110
FALA133
FVAL203
FILE204
FHOH1113
FHOH1409
FHOH1477
FHOH1629

site_idHC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL F 811
ChainResidue
ALYS561
AASP593
AGOL808
FTYR160
FLYS561
FSER591
FHOH996
FHOH1517

site_idHC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL F 812
ChainResidue
FGLU58
FPRO59
FARG61
FTYR575
FASP577
FASN578
FHOH925
FHOH990
FHOH1181
FHOH1214

Functional Information from PROSITE/UniProt
site_idPS01159
Number of Residues26
DetailsWW_DOMAIN_1 WW/rsp5/WWP domain signature. WgtgkrlqqalvYYrsdedd.SQYSHP
ChainResidueDetails
ATRP164-PRO189

site_idPS01164
Number of Residues14
DetailsCOPPER_AMINE_OXID_1 Copper amine oxidase topaquinone signature. LVVsqifTaaNYEY
ChainResidueDetails
ALEU394-TYR407

site_idPS01165
Number of Residues14
DetailsCOPPER_AMINE_OXID_2 Copper amine oxidase copper-binding site signature. TfGitHFpapEDfP
ChainResidueDetails
ATHR619-PRO632

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: Proton acceptor => ECO:0000269|PubMed:9551552
ChainResidueDetails
AASP319
BASP319
CASP319
DASP319
EASP319
FASP319

site_idSWS_FT_FI2
Number of Residues6
DetailsACT_SITE: Schiff-base intermediate with substrate; via topaquinone => ECO:0000269|PubMed:10933787, ECO:0000269|PubMed:9551552, ECO:0007744|PDB:1EKM, ECO:0007744|PDB:3NBB, ECO:0007744|PDB:3NBJ, ECO:0007744|PDB:3T0U, ECO:0007744|PDB:4KFF
ChainResidueDetails
ATYY405
BTYY405
CTYY405
DTYY405
ETYY405
FTYY405

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0007744|PDB:4EV2, ECO:0007744|PDB:4EV5
ChainResidueDetails
AALA317
BALA317
CALA317
DALA317
EALA317
FALA317

site_idSWS_FT_FI4
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P46883
ChainResidueDetails
AALA402
BALA402
CALA402
DALA402
EALA402
FALA402

site_idSWS_FT_FI5
Number of Residues18
DetailsBINDING: BINDING => ECO:0000269|PubMed:10933787, ECO:0000269|PubMed:9551552, ECO:0007744|PDB:1A2V, ECO:0007744|PDB:1EKM, ECO:0007744|PDB:2OOV, ECO:0007744|PDB:2OQE, ECO:0007744|PDB:3N9H, ECO:0007744|PDB:3NBB, ECO:0007744|PDB:3NBJ, ECO:0007744|PDB:3T0U, ECO:0007744|PDB:4EV2, ECO:0007744|PDB:4EV5, ECO:0007744|PDB:4KFD, ECO:0007744|PDB:4KFE, ECO:0007744|PDB:4KFF
ChainResidueDetails
AHIS456
DHIS456
DHIS458
DHIS624
EHIS456
EHIS458
EHIS624
FHIS456
FHIS458
FHIS624
AHIS458
AHIS624
BHIS456
BHIS458
BHIS624
CHIS456
CHIS458
CHIS624

site_idSWS_FT_FI6
Number of Residues18
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q43077
ChainResidueDetails
AASP465
DASP465
DASP613
DILE614
EASP465
EASP613
EILE614
FASP465
FASP613
FILE614
AASP613
AILE614
BASP465
BASP613
BILE614
CASP465
CASP613
CILE614

site_idSWS_FT_FI7
Number of Residues6
DetailsMOD_RES: 2',4',5'-topaquinone => ECO:0000269|PubMed:9551552, ECO:0007744|PDB:1A2V, ECO:0007744|PDB:2OQE
ChainResidueDetails
ATYY405
BTYY405
CTYY405
DTYY405
ETYY405
FTYY405

site_idSWS_FT_FI8
Number of Residues6
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:9551552
ChainResidueDetails
AASN243
BASN243
CASN243
DASN243
EASN243
FASN243

224931

PDB entries from 2024-09-11

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