4K4C
X-ray crystal structure of E. coli YbdB complexed with phenacyl-CoA
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005515 | molecular_function | protein binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0009239 | biological_process | enterobactin biosynthetic process |
| A | 0016289 | molecular_function | acyl-CoA hydrolase activity |
| A | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| A | 0016790 | molecular_function | thiolester hydrolase activity |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0061522 | molecular_function | 1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity |
| B | 0005515 | molecular_function | protein binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0009239 | biological_process | enterobactin biosynthetic process |
| B | 0016289 | molecular_function | acyl-CoA hydrolase activity |
| B | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| B | 0016790 | molecular_function | thiolester hydrolase activity |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0061522 | molecular_function | 1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity |
| C | 0005515 | molecular_function | protein binding |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005829 | cellular_component | cytosol |
| C | 0009239 | biological_process | enterobactin biosynthetic process |
| C | 0016289 | molecular_function | acyl-CoA hydrolase activity |
| C | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| C | 0016790 | molecular_function | thiolester hydrolase activity |
| C | 0042802 | molecular_function | identical protein binding |
| C | 0061522 | molecular_function | 1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity |
| D | 0005515 | molecular_function | protein binding |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005829 | cellular_component | cytosol |
| D | 0009239 | biological_process | enterobactin biosynthetic process |
| D | 0016289 | molecular_function | acyl-CoA hydrolase activity |
| D | 0016788 | molecular_function | hydrolase activity, acting on ester bonds |
| D | 0016790 | molecular_function | thiolester hydrolase activity |
| D | 0042802 | molecular_function | identical protein binding |
| D | 0061522 | molecular_function | 1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 23 |
| Details | BINDING SITE FOR RESIDUE 0FQ A 201 |
| Chain | Residue |
| A | GLN48 |
| A | ARG91 |
| A | PRO92 |
| A | HOH303 |
| A | HOH393 |
| B | HIS106 |
| B | GLY108 |
| B | ARG109 |
| B | GLN110 |
| B | ASN111 |
| D | GLU63 |
| A | PRO49 |
| D | SER67 |
| D | MET68 |
| D | GLY82 |
| D | THR83 |
| A | LEU53 |
| A | HIS54 |
| A | GLY55 |
| A | ASP76 |
| A | GLY77 |
| A | HIS89 |
| A | HIS90 |
| site_id | AC2 |
| Number of Residues | 22 |
| Details | BINDING SITE FOR RESIDUE 0FQ B 201 |
| Chain | Residue |
| A | HIS106 |
| A | GLY108 |
| A | ARG109 |
| A | GLN110 |
| A | ASN111 |
| B | GLN48 |
| B | PRO49 |
| B | PHE50 |
| B | LEU53 |
| B | HIS54 |
| B | GLY55 |
| B | GLY77 |
| B | HIS89 |
| B | HIS90 |
| B | ARG91 |
| B | PRO92 |
| B | HOH304 |
| C | GLU63 |
| C | SER67 |
| C | MET68 |
| C | VAL81 |
| C | GLY82 |
| site_id | AC3 |
| Number of Residues | 21 |
| Details | BINDING SITE FOR RESIDUE 0FQ C 201 |
| Chain | Residue |
| B | GLU63 |
| B | SER67 |
| B | MET68 |
| B | VAL81 |
| B | GLY82 |
| B | THR83 |
| C | GLN48 |
| C | PRO49 |
| C | LEU53 |
| C | HIS54 |
| C | GLY55 |
| C | HIS89 |
| C | HIS90 |
| C | ARG91 |
| C | PRO92 |
| C | HOH306 |
| C | HOH358 |
| D | GLY108 |
| D | ARG109 |
| D | GLN110 |
| D | ASN111 |
| site_id | AC4 |
| Number of Residues | 22 |
| Details | BINDING SITE FOR RESIDUE 0FQ D 201 |
| Chain | Residue |
| A | GLU63 |
| A | SER67 |
| A | MET68 |
| A | GLY82 |
| A | THR83 |
| A | LEU136 |
| C | HIS106 |
| C | GLY108 |
| C | ARG109 |
| C | GLN110 |
| C | ASN111 |
| D | GLN48 |
| D | PRO49 |
| D | LEU53 |
| D | HIS54 |
| D | GLY55 |
| D | ARG75 |
| D | HIS89 |
| D | HIS90 |
| D | ARG91 |
| D | PRO92 |
| D | HOH313 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | Active site: {"description":"Nucleophile or proton acceptor","evidences":[{"source":"HAMAP-Rule","id":"MF_00907","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"25010423","evidenceCode":"ECO:0000303"},{"source":"PubMed","id":"19193103","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 24 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"25010423","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
