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4K1R

Crystal structure of Schizosaccharomyces pombe sst2 catalytic domain and Ubiquitin

Functional Information from GO Data
ChainGOidnamespacecontents
A0008233molecular_functionpeptidase activity
A0008237molecular_functionmetallopeptidase activity
A0016579biological_processprotein deubiquitination
A0061578molecular_functionK63-linked deubiquitinase activity
A0070536biological_processprotein K63-linked deubiquitination
A0140492molecular_functionmetal-dependent deubiquitinase activity
C0008233molecular_functionpeptidase activity
C0008237molecular_functionmetallopeptidase activity
C0016579biological_processprotein deubiquitination
C0061578molecular_functionK63-linked deubiquitinase activity
C0070536biological_processprotein K63-linked deubiquitination
C0140492molecular_functionmetal-dependent deubiquitinase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 501
ChainResidue
AHIS304
AHIS332
ACL504
CGLU327

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 502
ChainResidue
AHIS341
AHIS343
AASP354
BGLY76

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 503
ChainResidue
ACYS397
AHIS404
AHIS406
AHIS356

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL A 504
ChainResidue
AHIS304
AHIS332
AGLN428
AZN501
CGLU327
CPHE328

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 505
ChainResidue
AGLN329
AASN333
ALEU334
ALEU335
BLEU8

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 506
ChainResidue
AGLN346
APHE349
AHOH700
AHOH701
AHOH710
BGLY76

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 507
ChainResidue
ATHR345
ASER376
ALYS377

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 508
ChainResidue
ALYS270
ASER380
AGLY381
AILE382
AGLN416
AGLU422

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EDO A 509
ChainResidue
ALYS294
AARG296

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO B 101
ChainResidue
AHOH633
BTHR7
BLEU8
BLEU69
BVAL70
BLEU71

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 501
ChainResidue
CHIS341
CHIS343
CASP354
DGLY76

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 502
ChainResidue
CHIS356
CCYS397
CHIS404
CHIS406

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN C 503
ChainResidue
AGLU327
CHIS304
CHIS332
CCL504

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL C 504
ChainResidue
AGLU327
APHE328
CHIS304
CHIS332
CGLN428
CZN503

site_idBC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO C 505
ChainResidue
AGLU311
ATHR316
ACYS317
AGLY318
AHOH649
BARG74
BHOH205
CTHR313
CASP315

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO C 506
ChainResidue
CASN333
CLEU334
CHOH682
CHOH683
DLEU8
DHOH219

site_idBC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO C 507
ChainResidue
CSER352
CVAL353
CHIS356
CGLY401
CLEU402
CHIS404
CHOH658

site_idBC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO D 101
ChainResidue
CHOH631
DTHR7
DLEU8
DLEU69
DVAL70
DLEU71

Functional Information from PROSITE/UniProt
site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD
ChainResidueDetails
BLYS27-ASP52

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: ADP-ribosylglycine => ECO:0000269|PubMed:28525742
ChainResidueDetails
BSER0
DSER0
AVAL353
CILE340
CTHR342
CVAL353

site_idSWS_FT_FI2
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)
ChainResidueDetails
BSER0
ALYS396
DSER0
APRO405
CLEU355
CLYS396
CPHE403
CPRO405

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Indirect zinc-binding => ECO:0000250
ChainResidueDetails
ALEU285
CLEU285

218500

PDB entries from 2024-04-17

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