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4JZX

Crystal Structure of Leshmaniasis major Farnesyl diphosphate synthase in complex with 3-BUTYL-1-(2,2-DIPHOSPHONOETHYL)PYRIDINIUM, IPP and Ca2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0004161molecular_functiondimethylallyltranstransferase activity
A0004337molecular_functiongeranyltranstransferase activity
A0005737cellular_componentcytoplasm
A0008299biological_processisoprenoid biosynthetic process
A0016740molecular_functiontransferase activity
A0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
A0045337biological_processfarnesyl diphosphate biosynthetic process
A0046872molecular_functionmetal ion binding
B0004161molecular_functiondimethylallyltranstransferase activity
B0004337molecular_functiongeranyltranstransferase activity
B0005737cellular_componentcytoplasm
B0008299biological_processisoprenoid biosynthetic process
B0016740molecular_functiontransferase activity
B0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
B0045337biological_processfarnesyl diphosphate biosynthetic process
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues18
DetailsBINDING SITE FOR RESIDUE IPE A 401
ChainResidue
AGLY47
AASP250
A476402
AHOH509
AHOH513
AHOH533
AHOH551
AHOH553
AHOH573
AHOH597
ALYS48
AARG51
AGLN91
AARG108
ATHR208
ATYR211
APHE246
AGLN247

site_idAC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE 476 A 402
ChainResidue
APHE94
AASP98
AASP102
AARG107
ATHR163
AGLN167
ALYS207
ATHR208
AASP250
ALYS264
AIPE401
ACA403
ACA404
ACA405
AHOH504
AHOH534
AHOH562
BASN126

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 403
ChainResidue
AASP98
AASP102
A476402
ACA405
AHOH501
AHOH504
AHOH543

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 404
ChainResidue
AASP250
A476402
AHOH505
AHOH506
AHOH545

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 405
ChainResidue
AASP98
AASP102
A476402
ACA403
AHOH502
AHOH503

site_idAC6
Number of Residues18
DetailsBINDING SITE FOR RESIDUE IPE B 401
ChainResidue
BGLY47
BLYS48
BARG51
BGLN91
BARG108
BTHR208
BTYR211
BPHE246
BGLN247
BASP250
B476402
BHOH509
BHOH512
BHOH528
BHOH539
BHOH560
BHOH563
BHOH584

site_idAC7
Number of Residues17
DetailsBINDING SITE FOR RESIDUE 476 B 402
ChainResidue
AASN126
BPHE94
BASP98
BASP102
BARG107
BGLN167
BLYS207
BTHR208
BASP250
BLYS264
BIPE401
BCA403
BCA404
BCA405
BHOH504
BHOH595
BHOH608

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA B 403
ChainResidue
BASP98
BASP102
B476402
BCA405
BHOH502
BHOH504
BHOH527

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 404
ChainResidue
BHOH506
BHOH525
BASP250
B476402
BHOH505

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 405
ChainResidue
BASP98
BASP102
B476402
BCA403
BHOH503
BHOH790

Functional Information from PROSITE/UniProt
site_idPS00444
Number of Residues13
DetailsPOLYPRENYL_SYNTHASE_2 Polyprenyl synthases signature 2. MGeyFQVqDDVmD
ChainResidueDetails
AMET242-ASP254

site_idPS00723
Number of Residues15
DetailsPOLYPRENYL_SYNTHASE_1 Polyprenyl synthases signature 1. LVeDDim..DhsktRRG
ChainResidueDetails
ALEU95-GLY109

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PDB entries from 2024-06-26

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