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4JYI

Crystal structure of RARbeta LBD in complex with selective partial agonist BMS641 [3-chloro-4-[(E)-2-(5,5-dimethyl-8-phenyl-5,6-dihydronaphthalen-2-yl)ethenyl]benzoic acid]

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0004879molecular_functionnuclear receptor activity
A0005634cellular_componentnucleus
A0006355biological_processregulation of DNA-templated transcription
A0048384biological_processretinoic acid receptor signaling pathway
B0003677molecular_functionDNA binding
B0004879molecular_functionnuclear receptor activity
B0005634cellular_componentnucleus
B0006355biological_processregulation of DNA-templated transcription
B0048384biological_processretinoic acid receptor signaling pathway
Functional Information from PDB Data
site_idAC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE JYI A 501
ChainResidue
APHE192
APHE295
AGLY384
AILE403
AHOH621
APHE221
AALA225
ACYS228
ALEU259
ALEU262
AARG269
APHE279
ASER280

site_idAC2
Number of Residues14
DetailsBINDING SITE FOR RESIDUE JYI B 501
ChainResidue
BPHE192
BPHE221
BALA225
BCYS228
BLEU262
BILE266
BARG269
BPHE279
BSER280
BPHE295
BGLY384
BVAL388
BLEU391
BHOH643

site_idAC3
Number of Residues12
DetailsBINDING SITE FOR RESIDUE FLC G 701
ChainResidue
AGLU337
APRO338
ATHR339
APRO401
AHOH691
AHOH723
GHIS630
GLYS631
GILE632
GARG635
GHOH811
GHOH813

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsMotif: {"description":"LXXLL motif 4"}
ChainResidueDetails

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PDB entries from 2025-09-24

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