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4JVQ

Crystal structure of hcv ns5b polymerase in complex with compound 9

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0003968molecular_functionRNA-directed RNA polymerase activity
A0039694biological_processviral RNA genome replication
B0003723molecular_functionRNA binding
B0003968molecular_functionRNA-directed RNA polymerase activity
B0039694biological_processviral RNA genome replication
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 3001
ChainResidue
AALA97
AARG168
AHOH3216

site_idAC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE 1ML A 3002
ChainResidue
AVAL494
APRO496
ALEU497
ATRP528
AHOH3282
AHOH3383
AMET423
AHIS475
ASER476
ATYR477
AILE482
AARG490

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 3003
ChainResidue
AGLN194
AGLN199
APHE551
AHOH3346
AHOH3458

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 3004
ChainResidue
AASP220
ATHR221
AHOH3138
AHOH3211
AHOH3305

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 601
ChainResidue
BSER96
BALA97
BPHE162
BARG168
BHOH783
BHOH916

site_idAC6
Number of Residues16
DetailsBINDING SITE FOR RESIDUE 1ML B 602
ChainResidue
ALYS209
ASER210
AHOH3454
BARG422
BLEU474
BHIS475
BSER476
BTYR477
BILE482
BALA486
BLEU489
BARG490
BVAL494
BPRO496
BLEU497
BHOH974

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 603
ChainResidue
BGLN194
BPHE551
BHOH827
BHOH859

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 604
ChainResidue
BASP220
BTHR221
BHOH799
BHOH819

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues236
DetailsDomain: {"description":"RdRp catalytic","evidences":[{"source":"PROSITE-ProRule","id":"PRU00539","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P26663","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsModified residue: {"description":"Phosphoserine; by host","evidences":[{"source":"UniProtKB","id":"P26662","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

239492

PDB entries from 2025-07-30

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