4J4H
PylD in complex with pyrroline-carboxy-lysine and NADH
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0008652 | biological_process | amino acid biosynthetic process |
| A | 0016491 | molecular_function | oxidoreductase activity |
| B | 0008652 | biological_process | amino acid biosynthetic process |
| B | 0016491 | molecular_function | oxidoreductase activity |
| C | 0008652 | biological_process | amino acid biosynthetic process |
| C | 0016491 | molecular_function | oxidoreductase activity |
| D | 0008652 | biological_process | amino acid biosynthetic process |
| D | 0016491 | molecular_function | oxidoreductase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 30 |
| Details | BINDING SITE FOR RESIDUE NAI A 901 |
| Chain | Residue |
| A | ALA2 |
| A | ASP173 |
| A | ALA203 |
| A | THR204 |
| A | PRO205 |
| A | CYS206 |
| A | THR209 |
| A | PRO224 |
| A | ILE226 |
| A | GLU245 |
| A | PRO246 |
| A | ASN121 |
| A | 1J1902 |
| A | MG904 |
| A | HOH1001 |
| A | HOH1002 |
| A | HOH1005 |
| A | HOH1091 |
| A | HOH1113 |
| A | HOH1166 |
| A | HOH1186 |
| C | HOH1041 |
| A | VAL147 |
| C | HOH1058 |
| A | GLY150 |
| A | LYS151 |
| A | VAL152 |
| A | TYR170 |
| A | ASP171 |
| A | ALA172 |
| site_id | AC2 |
| Number of Residues | 16 |
| Details | BINDING SITE FOR RESIDUE 1J1 A 902 |
| Chain | Residue |
| A | LEU3 |
| A | LEU4 |
| A | PRO52 |
| A | VAL53 |
| A | GLY58 |
| A | ILE59 |
| A | ILE60 |
| A | PHE63 |
| A | ALA103 |
| A | NAI901 |
| A | HOH1011 |
| A | HOH1013 |
| A | HOH1040 |
| A | HOH1042 |
| A | HOH1051 |
| A | HOH1166 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA A 903 |
| Chain | Residue |
| A | GLU202 |
| A | THR204 |
| A | CYS206 |
| A | PRO227 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 904 |
| Chain | Residue |
| A | TYR129 |
| A | GLU245 |
| A | LEU247 |
| A | ILE249 |
| A | GLY250 |
| A | NAI901 |
| site_id | AC5 |
| Number of Residues | 35 |
| Details | BINDING SITE FOR RESIDUE NAI B 901 |
| Chain | Residue |
| B | ALA2 |
| B | ASN121 |
| B | THR125 |
| B | VAL147 |
| B | GLY150 |
| B | LYS151 |
| B | VAL152 |
| B | TYR170 |
| B | ASP171 |
| B | ALA172 |
| B | LEU176 |
| B | ALA203 |
| B | THR204 |
| B | PRO205 |
| B | CYS206 |
| B | THR209 |
| B | PRO224 |
| B | ILE226 |
| B | GLU245 |
| B | PRO246 |
| B | LEU247 |
| B | 1J1902 |
| B | MG904 |
| B | HOH1001 |
| B | HOH1003 |
| B | HOH1036 |
| B | HOH1042 |
| B | HOH1082 |
| B | HOH1105 |
| B | HOH1125 |
| B | HOH1128 |
| B | HOH1142 |
| B | HOH1155 |
| B | HOH1163 |
| B | HOH1165 |
| site_id | AC6 |
| Number of Residues | 14 |
| Details | BINDING SITE FOR RESIDUE 1J1 B 902 |
| Chain | Residue |
| B | NAI901 |
| B | HOH1006 |
| B | HOH1017 |
| B | HOH1022 |
| B | HOH1077 |
| B | HOH1081 |
| B | LEU3 |
| B | LEU4 |
| B | VAL53 |
| B | GLY58 |
| B | ILE59 |
| B | ILE60 |
| B | PHE63 |
| B | ALA103 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA B 903 |
| Chain | Residue |
| B | GLU202 |
| B | THR204 |
| B | CYS206 |
| B | PRO227 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG B 904 |
| Chain | Residue |
| B | TYR129 |
| B | GLU245 |
| B | LEU247 |
| B | ILE249 |
| B | GLY250 |
| B | NAI901 |
| site_id | AC9 |
| Number of Residues | 30 |
| Details | BINDING SITE FOR RESIDUE NAI C 901 |
| Chain | Residue |
| C | MET1 |
| C | ALA2 |
| C | ASN121 |
| C | VAL147 |
| C | GLY148 |
| C | GLY150 |
| C | LYS151 |
| C | VAL152 |
| C | TYR170 |
| C | ASP171 |
| C | ALA172 |
| C | ASP173 |
| C | LEU176 |
| C | ALA203 |
| C | THR204 |
| C | PRO205 |
| C | CYS206 |
| C | THR209 |
| C | PRO224 |
| C | ILE226 |
| C | GLU245 |
| C | PRO246 |
| C | 1J1902 |
| C | MG904 |
| C | HOH1001 |
| C | HOH1002 |
| C | HOH1006 |
| C | HOH1017 |
| C | HOH1022 |
| C | HOH1024 |
| site_id | BC1 |
| Number of Residues | 15 |
| Details | BINDING SITE FOR RESIDUE 1J1 C 902 |
| Chain | Residue |
| C | LEU3 |
| C | LEU4 |
| C | PRO52 |
| C | VAL53 |
| C | GLY58 |
| C | ILE59 |
| C | ILE60 |
| C | PHE63 |
| C | ALA103 |
| C | NAI901 |
| C | HOH1004 |
| C | HOH1013 |
| C | HOH1015 |
| C | HOH1016 |
| C | HOH1021 |
| site_id | BC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA C 903 |
| Chain | Residue |
| C | GLU202 |
| C | THR204 |
| C | CYS206 |
| C | PRO227 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG C 904 |
| Chain | Residue |
| C | TYR129 |
| C | GLU245 |
| C | LEU247 |
| C | ILE249 |
| C | GLY250 |
| C | NAI901 |
| site_id | BC4 |
| Number of Residues | 29 |
| Details | BINDING SITE FOR RESIDUE NAI D 901 |
| Chain | Residue |
| B | HOH1124 |
| B | HOH1130 |
| D | MET1 |
| D | ALA2 |
| D | ASN121 |
| D | VAL147 |
| D | GLY150 |
| D | LYS151 |
| D | VAL152 |
| D | TYR170 |
| D | ASP171 |
| D | ALA172 |
| D | ALA203 |
| D | THR204 |
| D | PRO205 |
| D | CYS206 |
| D | THR209 |
| D | PRO224 |
| D | ILE226 |
| D | GLU245 |
| D | PRO246 |
| D | 1J1902 |
| D | MG904 |
| D | HOH1001 |
| D | HOH1005 |
| D | HOH1009 |
| D | HOH1024 |
| D | HOH1025 |
| D | HOH1040 |
| site_id | BC5 |
| Number of Residues | 15 |
| Details | BINDING SITE FOR RESIDUE 1J1 D 902 |
| Chain | Residue |
| D | LEU4 |
| D | PRO52 |
| D | VAL53 |
| D | GLY58 |
| D | ILE59 |
| D | ILE60 |
| D | PHE63 |
| D | ALA103 |
| D | ASP104 |
| D | NAI901 |
| D | HOH1002 |
| D | HOH1003 |
| D | HOH1006 |
| D | HOH1014 |
| D | HOH1036 |
| site_id | BC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE NA D 903 |
| Chain | Residue |
| D | GLU202 |
| D | THR204 |
| D | CYS206 |
| D | PRO227 |
| site_id | BC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG D 904 |
| Chain | Residue |
| D | TYR129 |
| D | GLU245 |
| D | LEU247 |
| D | ILE249 |
| D | GLY250 |
| D | NAI901 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 16 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"24916332","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4Q39","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 28 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"23720358","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24916332","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4JK3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4Q3D","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
