4IZG
Crystal structure of an enolase (mandelate racemase subgroup) from paracococus denitrificans pd1222 (target nysgrc-012907) with bound cis-4oh-d-proline betaine (product)
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0006579 | biological_process | amino-acid betaine catabolic process |
| A | 0016853 | molecular_function | isomerase activity |
| A | 0016854 | molecular_function | racemase and epimerase activity |
| A | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| A | 0036361 | molecular_function | racemase activity, acting on amino acids and derivatives |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0006579 | biological_process | amino-acid betaine catabolic process |
| B | 0016853 | molecular_function | isomerase activity |
| B | 0016854 | molecular_function | racemase and epimerase activity |
| B | 0016855 | molecular_function | racemase and epimerase activity, acting on amino acids and derivatives |
| B | 0036361 | molecular_function | racemase activity, acting on amino acids and derivatives |
| B | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE IOD A 401 |
| Chain | Residue |
| A | TRP46 |
| A | HOH695 |
| A | HOH835 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IOD A 402 |
| Chain | Residue |
| A | ALA44 |
| A | LYS114 |
| site_id | AC3 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IOD A 403 |
| Chain | Residue |
| A | HOH640 |
| site_id | AC4 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IOD A 404 |
| Chain | Residue |
| A | ALA61 |
| site_id | AC5 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IOD A 405 |
| Chain | Residue |
| A | HOH860 |
| site_id | AC6 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IOD A 406 |
| Chain | Residue |
| A | HOH530 |
| site_id | AC7 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IOD A 407 |
| Chain | Residue |
| A | ARG232 |
| site_id | AC8 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IOD A 408 |
| Chain | Residue |
| A | ARG315 |
| site_id | AC9 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IOD A 409 |
| Chain | Residue |
| A | TYR136 |
| A | GLY139 |
| site_id | BC1 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE IOD A 412 |
| Chain | Residue |
| A | ARG88 |
| A | HOH588 |
| B | HOH636 |
| site_id | BC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE MG A 413 |
| Chain | Residue |
| A | HOH537 |
| A | HOH592 |
| A | HOH609 |
| A | HOH706 |
| A | HOH723 |
| A | HOH745 |
| site_id | BC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG A 414 |
| Chain | Residue |
| A | ASP194 |
| A | GLU219 |
| A | ASP242 |
| A | 4OP416 |
| A | HOH504 |
| site_id | BC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG A 415 |
| Chain | Residue |
| A | SER369 |
| A | HOH553 |
| B | GLN142 |
| B | HOH697 |
| B | HOH879 |
| site_id | BC5 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE 4OP A 416 |
| Chain | Residue |
| A | TYR56 |
| A | TYR135 |
| A | ALA137 |
| A | GLN162 |
| A | LYS164 |
| A | ASP194 |
| A | ASN196 |
| A | GLU219 |
| A | ASP242 |
| A | LYS266 |
| A | ALA295 |
| A | MG414 |
| A | HOH693 |
| site_id | BC6 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IOD B 401 |
| Chain | Residue |
| B | ARG315 |
| site_id | BC7 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IOD B 402 |
| Chain | Residue |
| B | GLY77 |
| B | ARG89 |
| site_id | BC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE IOD B 403 |
| Chain | Residue |
| B | LEU43 |
| B | ALA44 |
| B | LYS114 |
| site_id | BC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE IOD B 404 |
| Chain | Residue |
| B | TRP46 |
| B | HOH773 |
| B | HOH811 |
| site_id | CC1 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IOD B 407 |
| Chain | Residue |
| B | HOH654 |
| B | HOH822 |
| site_id | CC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IOD B 408 |
| Chain | Residue |
| A | HOH837 |
| B | ALA61 |
| site_id | CC3 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IOD B 410 |
| Chain | Residue |
| B | GLY139 |
| site_id | CC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IOD B 411 |
| Chain | Residue |
| B | GLN142 |
| B | GLU145 |
| site_id | CC5 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IOD B 412 |
| Chain | Residue |
| B | GLU171 |
| B | HOH826 |
| site_id | CC6 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IOD B 413 |
| Chain | Residue |
| B | ARG178 |
| site_id | CC7 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE IOD B 414 |
| Chain | Residue |
| B | ARG232 |
| site_id | CC8 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE IOD B 415 |
| Chain | Residue |
| B | ARG88 |
| B | HOH547 |
| site_id | CC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG B 416 |
| Chain | Residue |
| B | HOH592 |
| B | HOH684 |
| B | HOH695 |
| B | HOH747 |
| B | HOH842 |
| site_id | DC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MG B 417 |
| Chain | Residue |
| B | ASP194 |
| B | GLU219 |
| B | ASP242 |
| B | 4OP418 |
| B | HOH516 |
| site_id | DC2 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE 4OP B 418 |
| Chain | Residue |
| B | TYR56 |
| B | TYR135 |
| B | GLN162 |
| B | LYS164 |
| B | ASP194 |
| B | ASN196 |
| B | GLU219 |
| B | ASP242 |
| B | LYS266 |
| B | ALA295 |
| B | MG417 |
| B | HOH653 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | ACT_SITE: Proton donor/acceptor => ECO:0000250 |
| Chain | Residue | Details |
| A | LYS164 | |
| A | LYS266 | |
| B | LYS164 | |
| B | LYS266 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 12 |
| Details | BINDING: |
| Chain | Residue | Details |
| A | TYR56 | |
| B | GLU219 | |
| B | ASP242 | |
| B | ALA295 | |
| A | GLN162 | |
| A | ASP194 | |
| A | GLU219 | |
| A | ASP242 | |
| A | ALA295 | |
| B | TYR56 | |
| B | GLN162 | |
| B | ASP194 |
