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4IXZ

Native structure of cystathionine gamma lyase (XometC) from xanthomonas oryzae pv. oryzae at pH 9.0

Replaces:  3NMY
Functional Information from GO Data
ChainGOidnamespacecontents
A0000096biological_processsulfur amino acid metabolic process
A0003962molecular_functioncystathionine gamma-synthase activity
A0004123molecular_functioncystathionine gamma-lyase activity
A0005737cellular_componentcytoplasm
A0016846molecular_functioncarbon-sulfur lyase activity
A0019343biological_processcysteine biosynthetic process via cystathionine
A0019346biological_processtranssulfuration
A0030170molecular_functionpyridoxal phosphate binding
B0000096biological_processsulfur amino acid metabolic process
B0003962molecular_functioncystathionine gamma-synthase activity
B0004123molecular_functioncystathionine gamma-lyase activity
B0005737cellular_componentcytoplasm
B0016846molecular_functioncarbon-sulfur lyase activity
B0019343biological_processcysteine biosynthetic process via cystathionine
B0019346biological_processtranssulfuration
B0030170molecular_functionpyridoxal phosphate binding
C0000096biological_processsulfur amino acid metabolic process
C0003962molecular_functioncystathionine gamma-synthase activity
C0004123molecular_functioncystathionine gamma-lyase activity
C0005737cellular_componentcytoplasm
C0016846molecular_functioncarbon-sulfur lyase activity
C0019343biological_processcysteine biosynthetic process via cystathionine
C0019346biological_processtranssulfuration
C0030170molecular_functionpyridoxal phosphate binding
D0000096biological_processsulfur amino acid metabolic process
D0003962molecular_functioncystathionine gamma-synthase activity
D0004123molecular_functioncystathionine gamma-lyase activity
D0005737cellular_componentcytoplasm
D0016846molecular_functioncarbon-sulfur lyase activity
D0019343biological_processcysteine biosynthetic process via cystathionine
D0019346biological_processtranssulfuration
D0030170molecular_functionpyridoxal phosphate binding
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BCT A 401
ChainResidue
ATYR112
AASN160
ALLP210
ASER339
ALEU340
ATHR354
AARG374
AHOH680

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BME A 402
ChainResidue
AARG266
ACYS269
AGLY308
AHOH553
ALEU193

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE BME B 401
ChainResidue
BLEU193
BMET265
BARG266
BCYS269
BGLY308
BPHE309
BHOH596

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BME C 401
ChainResidue
CLEU193
CARG266
CCYS269
CGLY308
CHOH678

site_idAC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL D 401
ChainResidue
AASP167
AILE168
AALA169
AARG304
AGLN305
DALA294
DSER295
DHIS296
DPRO297

Functional Information from PROSITE/UniProt
site_idPS00868
Number of Residues15
DetailsCYS_MET_METAB_PP Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. DLvvhSATKYLnGHS
ChainResidueDetails
AASP202-SER216

246704

PDB entries from 2025-12-24

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