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4IXM

Crystal structure of Zn(II)-bound YjiA GTPase from E. coli

Functional Information from GO Data
ChainGOidnamespacecontents
A0003924molecular_functionGTPase activity
A0005525molecular_functionGTP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006974biological_processDNA damage response
A0016787molecular_functionhydrolase activity
A0042802molecular_functionidentical protein binding
A0046872molecular_functionmetal ion binding
A0046914molecular_functiontransition metal ion binding
B0003924molecular_functionGTPase activity
B0005525molecular_functionGTP binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006974biological_processDNA damage response
B0016787molecular_functionhydrolase activity
B0042802molecular_functionidentical protein binding
B0046872molecular_functionmetal ion binding
B0046914molecular_functiontransition metal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 401
ChainResidue
AGLU37
AGLU39
AGLU42
ACYS66

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 402
ChainResidue
AGLU74
AHIS114
BGLU74
BHIS114

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ZN A 403
ChainResidue
AHIS170
BHIS187
AGLU167

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ZN A 404
ChainResidue
AHIS187
BGLU167

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 405
ChainResidue
ASER113
AHIS114
AGLU115
AHOH511

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 401
ChainResidue
BGLU37
BGLU39
BGLU42
BCYS66

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 402
ChainResidue
BSER113
BHIS114
BGLU115

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P9WPZ1
ChainResidueDetails
AGLY11
AASP161
BGLY11
BASP161

site_idSWS_FT_FI2
Number of Residues14
DetailsBINDING: BINDING => ECO:0000269|PubMed:24449932
ChainResidueDetails
AGLU37
BCYS66
BGLU74
BHIS114
BGLU167
BHIS170
AGLU42
ACYS66
AGLU74
AHIS114
AGLU167
AHIS170
BGLU37
BGLU42

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: in other chain => ECO:0000269|PubMed:24449932
ChainResidueDetails
AHIS187
BHIS187

221716

PDB entries from 2024-06-26

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