4II2
Crystal structure of Ubiquitin activating enzyme 1 (Uba1) in complex with the Ub E2 Ubc4, ubiquitin, and ATP/Mg
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0004839 | molecular_function | ubiquitin activating enzyme activity |
A | 0005515 | molecular_function | protein binding |
A | 0005524 | molecular_function | ATP binding |
A | 0005634 | cellular_component | nucleus |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006511 | biological_process | ubiquitin-dependent protein catabolic process |
A | 0006974 | biological_process | DNA damage response |
A | 0008641 | molecular_function | ubiquitin-like modifier activating enzyme activity |
A | 0016567 | biological_process | protein ubiquitination |
A | 0016874 | molecular_function | ligase activity |
A | 0016887 | molecular_function | ATP hydrolysis activity |
A | 0036211 | biological_process | protein modification process |
C | 0000151 | cellular_component | ubiquitin ligase complex |
C | 0000209 | biological_process | protein polyubiquitination |
C | 0004842 | molecular_function | ubiquitin-protein transferase activity |
C | 0005515 | molecular_function | protein binding |
C | 0005524 | molecular_function | ATP binding |
C | 0005634 | cellular_component | nucleus |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0006511 | biological_process | ubiquitin-dependent protein catabolic process |
C | 0016567 | biological_process | protein ubiquitination |
C | 0016740 | molecular_function | transferase activity |
C | 0031146 | biological_process | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process |
C | 0031625 | molecular_function | ubiquitin protein ligase binding |
C | 0032933 | biological_process | SREBP signaling pathway |
C | 0045842 | biological_process | positive regulation of mitotic metaphase/anaphase transition |
C | 0061631 | molecular_function | ubiquitin conjugating enzyme activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE MG A 1101 |
Chain | Residue |
A | ASP537 |
A | ATP1103 |
A | HOH1208 |
A | HOH1210 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 1102 |
Chain | Residue |
A | HOH1211 |
A | ASP465 |
A | ATP1103 |
A | HOH1201 |
A | HOH1204 |
A | HOH1209 |
site_id | AC3 |
Number of Residues | 29 |
Details | BINDING SITE FOR RESIDUE ATP A 1103 |
Chain | Residue |
A | ARG22 |
A | GLY436 |
A | ALA437 |
A | ASP463 |
A | MET464 |
A | ASP465 |
A | ASN471 |
A | ARG474 |
A | GLN475 |
A | LYS487 |
A | ARG512 |
A | VAL513 |
A | ALA535 |
A | LEU536 |
A | ASP537 |
A | ASN538 |
A | ALA541 |
A | MG1101 |
A | MG1102 |
A | HOH1202 |
A | HOH1203 |
A | HOH1204 |
A | HOH1205 |
A | HOH1206 |
A | HOH1207 |
A | HOH1208 |
A | HOH1210 |
A | HOH1211 |
B | GLY76 |
site_id | AC4 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE PG0 A 1104 |
Chain | Residue |
A | ASP281 |
A | LYS284 |
A | PHE386 |
A | ASP387 |
A | SER388 |
A | GLU390 |
A | LEU865 |
A | LEU868 |
A | PHE897 |
A | HOH1256 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 1105 |
Chain | Residue |
A | HIS305 |
A | SER308 |
A | ARG311 |
A | ASP317 |
A | SO41112 |
site_id | AC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO A 1106 |
Chain | Residue |
A | THR14 |
A | ILE15 |
A | ASP16 |
A | TYR20 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO A 1107 |
Chain | Residue |
A | ARG547 |
A | EDO1108 |
A | HOH1487 |
site_id | AC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO A 1108 |
Chain | Residue |
A | ARG548 |
A | PHE551 |
A | EDO1107 |
site_id | AC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 1109 |
Chain | Residue |
A | LYS46 |
A | GLY47 |
A | LEU48 |
A | GLU130 |
A | SER155 |
A | ARG156 |
A | ASP353 |
site_id | BC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO A 1110 |
Chain | Residue |
A | THR65 |
A | ASN122 |
A | HOH1648 |
site_id | BC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 A 1111 |
Chain | Residue |
A | GLY28 |
A | HIS29 |
A | GLU30 |
A | HOH1261 |
A | HOH1618 |
site_id | BC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 A 1112 |
Chain | Residue |
A | SER308 |
A | ARG311 |
A | ARG351 |
A | EDO1105 |
A | HOH1581 |
A | HOH1585 |
site_id | BC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 1113 |
Chain | Residue |
A | ARG645 |
A | LEU787 |
C | ARG72 |
C | TYR145 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 101 |
Chain | Residue |
A | GLN569 |
A | GLU577 |
A | HOH1227 |
B | ARG42 |
B | GLN49 |
B | HOH206 |
site_id | BC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE SO4 B 102 |
Chain | Residue |
B | ARG29 |
B | ARG33 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 1 |
Details | ACT_SITE: Glycyl thioester intermediate => ECO:0000255|PROSITE-ProRule:PRU00388, ECO:0000255|PROSITE-ProRule:PRU10133 |
Chain | Residue | Details |
C | CYS85 | |
B | ARG11 | |
B | ARG27 | |
B | ARG33 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | CROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) => ECO:0000255|PROSITE-ProRule:PRU00214 |
Chain | Residue | Details |
A | ARG22 | |
B | GLY76 | |
A | ASP463 | |
A | LYS487 | |
A | VAL513 | |
A | ASP537 |
site_id | SWS_FT_FI3 |
Number of Residues | 3 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250 |
Chain | Residue | Details |
B | ARG29 | |
B | ARG48 | |
B | ARG63 |