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4ICM

Crystal structure of 5-carboxyvanillate decarboxylase LigW from Sphingomonas paucimobilis

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0016787molecular_functionhydrolase activity
A0016829molecular_functionlyase activity
A0016831molecular_functioncarboxy-lyase activity
A0019748biological_processsecondary metabolic process
A0046872molecular_functionmetal ion binding
A1901360biological_processorganic cyclic compound metabolic process
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0016787molecular_functionhydrolase activity
B0016829molecular_functionlyase activity
B0016831molecular_functioncarboxy-lyase activity
B0019748biological_processsecondary metabolic process
B0046872molecular_functionmetal ion binding
B1901360biological_processorganic cyclic compound metabolic process
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0016787molecular_functionhydrolase activity
C0016829molecular_functionlyase activity
C0016831molecular_functioncarboxy-lyase activity
C0019748biological_processsecondary metabolic process
C0046872molecular_functionmetal ion binding
C1901360biological_processorganic cyclic compound metabolic process
D0005737cellular_componentcytoplasm
D0005829cellular_componentcytosol
D0016787molecular_functionhydrolase activity
D0016829molecular_functionlyase activity
D0016831molecular_functioncarboxy-lyase activity
D0019748biological_processsecondary metabolic process
D0046872molecular_functionmetal ion binding
D1901360biological_processorganic cyclic compound metabolic process
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0016787molecular_functionhydrolase activity
E0016829molecular_functionlyase activity
E0016831molecular_functioncarboxy-lyase activity
E0019748biological_processsecondary metabolic process
E0046872molecular_functionmetal ion binding
E1901360biological_processorganic cyclic compound metabolic process
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0016787molecular_functionhydrolase activity
F0016829molecular_functionlyase activity
F0016831molecular_functioncarboxy-lyase activity
F0019748biological_processsecondary metabolic process
F0046872molecular_functionmetal ion binding
F1901360biological_processorganic cyclic compound metabolic process
G0005737cellular_componentcytoplasm
G0005829cellular_componentcytosol
G0016787molecular_functionhydrolase activity
G0016829molecular_functionlyase activity
G0016831molecular_functioncarboxy-lyase activity
G0019748biological_processsecondary metabolic process
G0046872molecular_functionmetal ion binding
G1901360biological_processorganic cyclic compound metabolic process
H0005737cellular_componentcytoplasm
H0005829cellular_componentcytosol
H0016787molecular_functionhydrolase activity
H0016829molecular_functionlyase activity
H0016831molecular_functioncarboxy-lyase activity
H0019748biological_processsecondary metabolic process
H0046872molecular_functionmetal ion binding
H1901360biological_processorganic cyclic compound metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 401
ChainResidue
AGLU7
AHIS173
AASP296
AHOH519
AHOH557
AHOH748

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 401
ChainResidue
BHOH544
BHOH700
BHOH791
BGLU7
BHIS173
BASP296

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN C 401
ChainResidue
CGLU7
CHIS173
CASP296
CHOH515
CHOH741
CHOH746

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PEG C 402
ChainResidue
CTYR240
CMET241
CGLY243
CASN244

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN D 401
ChainResidue
DGLU7
DHIS173
DASP296
DHOH508
DHOH663
DHOH702

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN E 401
ChainResidue
EGLU7
EHIS173
EASP296
EHOH589
EHOH691
EHOH777

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN F 401
ChainResidue
FGLU7
FHIS173
FASP296
FHOH535
FHOH675
FHOH752

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL F 402
ChainResidue
CPHE248
FARG45
FPRO46
FALA47
FMET48

site_idAC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN G 401
ChainResidue
GGLU7
GHIS173
GASP296
GHOH518
GHOH780
GHOH781

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN H 401
ChainResidue
HGLU7
HHIS173
HASP296
HHOH520
HHOH707
HHOH796

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL H 402
ChainResidue
HTYR240
HGLY243
HASN244
HHOH617
HHOH625

221051

PDB entries from 2024-06-12

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